Detailed information NTG0399841

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: HT132_RS05275
• Genome accession: NZ_CP054479
• Coordinates: 1034431..1035561 (+)
• Length: 376 a.a.
• NCBI ID: WP_174532422.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain R8-25
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1029431..1040561

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HT132_RS05260 (HT132_05260)	-	1030230..1031483 (+)	1254	WP_100261993.1	alanine--glyoxylate aminotransferase family protein	-
HT132_RS05265 (HT132_05265)	-	1031605..1032801 (+)	1197	WP_072177417.1	MFS transporter	-
HT132_RS05270 (HT132_05270)	-	1032859..1033992 (+)	1134	WP_094296265.1	hypothetical protein	-
HT132_RS19680	-	1034117..1034296 (+)	180	WP_021493988.1	hypothetical protein	-
HT132_RS05275 (HT132_05275)	rapC	1034431..1035561 (+)	1131	WP_174532422.1	Rap family tetratricopeptide repeat protein	Regulator
HT132_RS19850	-	1035696..1035824 (+)	129	WP_014721768.1	hypothetical protein	-
HT132_RS05280 (HT132_05280)	-	1036012..1037607 (-)	1596	WP_021493985.1	PucR family transcriptional regulator	-
HT132_RS05285 (HT132_05285)	-	1037787..1039151 (+)	1365	WP_014418803.1	allantoinase	-
HT132_RS05290 (HT132_05290)	-	1039224..1039577 (+)	354	WP_007408736.1	hypothetical protein	-
HT132_RS05295 (HT132_05295)	-	1039604..1040455 (+)	852	WP_014418802.1	DUF72 domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44485.95 Da
• Isoelectric Point: 6.5116

>NTDB_id=399841 HT132_RS05275 WP_174532422.1 1034431..1035561(+) (rapC) [Bacillus amyloliquefaciens strain R8-25]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRLTIDE
LLEKIEASNKGISGLLFYYSLFFRGMYEFDQKQYVKAIGFYKEAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYNKAE
IYLKKATEISEKYKLGNLPHSLFTYAKLLFKQGKTTEAIQISKKGLSSAIFQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=399841 HT132_RS05275 WP_174532422.1 1034431..1035561(+) (rapC) [Bacillus amyloliquefaciens strain R8-25]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTTATGCTGGATTATTTAGAACCGGTGACTACCCGCGTGAGACTGACAATTGACGAG
CTGCTGGAAAAAATTGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTTCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAAAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAGGTCCGGAAAATTCAATGTCTATTTGTCATATCAGG
GAACTATGTAGACTTTAAACGTTATGAAAAAAGCTTGCCGCATTTAGAGAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAATAAAGCTGAA
ATCTACTTAAAAAAAGCAACGGAGATATCTGAGAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAACCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATTTCAAGGAG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAATC
AAAGCAATATGACAAGTCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (193-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.327	100	0.447
rapF	Bacillus subtilis subsp. subtilis str. 168	40.263	100	0.407