Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HTZ88_RS06535 Genome accession   NZ_CP054418
Coordinates   1269890..1271569 (-) Length   559 a.a.
NCBI ID   WP_135197636.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain 4010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1264890..1276569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ88_RS06515 (HTZ88_06455) pepA 1265093..1266169 (-) 1077 WP_135197633.1 glutamyl aminopeptidase -
  HTZ88_RS06520 (HTZ88_06460) - 1266207..1266872 (-) 666 WP_135197634.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  HTZ88_RS06525 (HTZ88_06465) - 1267010..1268365 (+) 1356 WP_135197635.1 MATE family efflux transporter -
  HTZ88_RS06530 (HTZ88_06470) - 1268520..1269827 (+) 1308 WP_014974642.1 NCS2 family permease -
  HTZ88_RS06535 (HTZ88_06475) recN 1269890..1271569 (-) 1680 WP_135197636.1 DNA repair protein RecN Machinery gene
  HTZ88_RS06540 (HTZ88_06480) - 1271608..1272063 (-) 456 WP_014974644.1 arginine repressor -
  HTZ88_RS06545 (HTZ88_06485) - 1272056..1272898 (-) 843 WP_014974645.1 TlyA family RNA methyltransferase -
  HTZ88_RS06550 (HTZ88_06490) - 1272895..1273803 (-) 909 WP_135197638.1 polyprenyl synthetase family protein -
  HTZ88_RS06555 (HTZ88_06495) - 1273796..1274020 (-) 225 WP_014974647.1 exodeoxyribonuclease VII small subunit -
  HTZ88_RS06560 (HTZ88_06500) xseA 1274013..1275299 (-) 1287 WP_135197639.1 exodeoxyribonuclease VII large subunit -
  HTZ88_RS06565 (HTZ88_06505) - 1275355..1276497 (-) 1143 WP_135198168.1 CamS family sex pheromone protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 62335.40 Da        Isoelectric Point: 4.6449

>NTDB_id=399682 HTZ88_RS06535 WP_135197636.1 1269890..1271569(-) (recN) [Leuconostoc carnosum strain 4010]
MLENLIIENFAIIEKVNLEFDGGMSVLTGETGAGKSIIIDALSMLTGGRANSEMVRHGSHKAVLQAVFSVPNNTDLLNDL
DHNGITIEDGELIIYRELNQNGRSTIRINSVLVNLKTLSAIGQHLVDIQGQNDTQQLLNSEEHLPLLDAFGGENLAIVKR
QYAKLFNDFRSITQHIRKIQTSQQEITQRLDLLQFQQQELNDAALEAHEEEHLLDSRGKLINFKKIADRLQSAQTALNGD
QVGAVDLLAEAMHVLQEISEYDDNYAELATTIADSYYVAQEVGRDVDEQMGQLTYDETELLRIEERLQLIHSLERKYGTT
VADVLAFQSKVDQELSAIDHDEYDIEQLQIKKNELRQVLRKQAIKLREVRQQVARDLEQNVNQQLSDLLMPGAEFEVHFE
PIEGFVSSGTDKIEFYVQTNIGEGMAPLVKIASGGEAARLMLALKTTFAKQQHIISIIFDEADTGVSGRVAQAIAKKMMT
IATDSQVLAITHLPQVAAAATHHFLISKATENDRTITKVQHLDENGRERAIAMMLSGDKITDTALANARDLRLQATDIN

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=399682 HTZ88_RS06535 WP_135197636.1 1269890..1271569(-) (recN) [Leuconostoc carnosum strain 4010]
ATGTTAGAAAATCTTATTATTGAAAATTTTGCGATTATTGAAAAGGTGAATTTAGAATTTGACGGTGGAATGAGCGTCTT
AACTGGTGAAACAGGTGCAGGAAAATCAATTATCATTGATGCTTTGTCGATGCTAACTGGTGGCCGTGCGAATTCTGAGA
TGGTGCGCCACGGTAGTCATAAGGCAGTTTTACAAGCGGTTTTTAGTGTACCCAATAATACAGATTTGCTCAATGATCTT
GATCATAATGGTATTACTATCGAAGATGGTGAGTTAATCATTTATCGTGAATTAAACCAAAATGGACGTAGTACTATTCG
AATAAATAGTGTTTTAGTTAATTTGAAAACATTATCTGCTATTGGGCAACATTTGGTGGATATTCAAGGACAAAATGATA
CACAACAGCTATTAAATAGTGAAGAACATTTGCCCTTGCTGGATGCATTTGGTGGTGAAAATCTTGCAATCGTTAAGCGG
CAATACGCCAAGTTATTTAATGATTTTCGTTCAATCACGCAACACATTAGAAAAATTCAAACATCACAGCAAGAAATAAC
GCAACGACTAGATCTATTGCAATTTCAGCAACAAGAACTAAATGATGCCGCATTAGAAGCGCATGAAGAAGAACACTTAC
TAGATTCACGCGGTAAACTGATCAATTTCAAAAAAATTGCTGATCGTTTGCAGAGTGCGCAAACTGCGCTTAATGGCGAT
CAAGTTGGGGCTGTTGATTTGTTAGCAGAAGCGATGCATGTGTTGCAAGAAATTTCAGAATACGATGATAATTATGCCGA
ATTAGCAACCACAATTGCAGATAGTTATTACGTCGCTCAAGAAGTTGGACGTGATGTTGATGAGCAGATGGGTCAACTAA
CATATGATGAAACAGAGTTATTGCGTATTGAAGAACGGTTACAGTTGATTCATTCTTTGGAAAGAAAATATGGAACAACG
GTCGCTGATGTTCTAGCTTTCCAATCAAAAGTTGATCAGGAATTATCAGCTATTGATCATGATGAATACGATATAGAACA
ACTTCAGATAAAGAAAAATGAATTAAGACAAGTTTTACGTAAACAAGCTATTAAATTACGAGAAGTCAGGCAACAAGTTG
CCCGAGATTTAGAACAAAATGTGAACCAACAATTGAGTGACTTGTTGATGCCTGGTGCTGAATTTGAAGTACATTTTGAA
CCAATTGAAGGTTTTGTGTCATCAGGAACAGATAAAATTGAATTTTACGTTCAAACAAATATTGGTGAAGGTATGGCGCC
GTTAGTTAAAATTGCATCTGGTGGTGAAGCTGCGCGATTAATGTTAGCGTTAAAAACAACATTTGCTAAGCAACAACATA
TTATTTCAATTATTTTTGATGAGGCAGACACAGGTGTATCAGGTCGTGTTGCTCAGGCAATTGCAAAAAAAATGATGACA
ATTGCTACTGATTCACAAGTATTAGCGATTACTCATCTACCACAGGTTGCCGCGGCCGCCACACACCATTTTTTAATTTC
AAAAGCAACTGAAAATGATCGTACCATCACTAAAGTACAGCATCTTGATGAAAATGGACGGGAACGTGCGATTGCAATGA
TGTTATCAGGAGATAAAATTACTGATACTGCACTTGCTAATGCCAGAGATTTACGTCTTCAGGCAACTGATATAAATTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(5-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

37.391

100

0.385

Multiple sequence alignment