Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   HTZ88_RS04120 Genome accession   NZ_CP054418
Coordinates   783180..783821 (-) Length   213 a.a.
NCBI ID   WP_014974221.1    Uniprot ID   K0D6S7
Organism   Leuconostoc carnosum strain 4010     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 778180..788821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ88_RS04105 (HTZ88_04075) carB 778533..781712 (+) 3180 WP_135197366.1 carbamoyl-phosphate synthase large subunit -
  HTZ88_RS04110 (HTZ88_04080) pyrF 781803..782495 (+) 693 WP_305068299.1 orotidine-5'-phosphate decarboxylase -
  HTZ88_RS04115 (HTZ88_04085) pyrE 782496..783131 (+) 636 WP_135197368.1 orotate phosphoribosyltransferase -
  HTZ88_RS04120 (HTZ88_04090) dinR/lexA 783180..783821 (-) 642 WP_014974221.1 transcriptional repressor LexA Regulator
  HTZ88_RS04125 (HTZ88_04095) - 784120..784353 (+) 234 WP_172600968.1 YneF family protein -
  HTZ88_RS04130 (HTZ88_04100) - 784364..785011 (-) 648 WP_014974223.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  HTZ88_RS04135 (HTZ88_04105) - 785074..785838 (+) 765 WP_135197369.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HTZ88_RS04140 (HTZ88_04110) - 785835..786119 (+) 285 WP_135197370.1 GIY-YIG nuclease family protein -
  HTZ88_RS04145 (HTZ88_04115) rpsB 786279..787055 (+) 777 WP_014974226.1 30S ribosomal protein S2 -
  HTZ88_RS04150 (HTZ88_04120) tsf 787169..788044 (+) 876 WP_019041572.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23272.62 Da        Isoelectric Point: 4.8179

>NTDB_id=399671 HTZ88_RS04120 WP_014974221.1 783180..783821(-) (dinR/lexA) [Leuconostoc carnosum strain 4010]
MANNIKESKQLQVLRFIHEAQLSNGYPPTVREVGEAVGLSSSSTIHGHIERLVKKGYLLKDAAKPRARAIEVSDAGLEAL
GLSTTPGRIPVLGLVTAGTPVLAVEEEATEFFPIPDNLMQFDGDMFMLNVKGNSMVNIGILDGDKVIVRKQDNADNGDVV
VAMNEDDEATVKRFFREADHFRLQPENDAMAPIILNNVSILGKVIGLYRDAIY

Nucleotide


Download         Length: 642 bp        

>NTDB_id=399671 HTZ88_RS04120 WP_014974221.1 783180..783821(-) (dinR/lexA) [Leuconostoc carnosum strain 4010]
ATGGCAAACAATATTAAAGAAAGTAAACAACTACAAGTATTGCGCTTCATCCATGAAGCACAATTATCAAATGGTTATCC
ACCAACAGTGCGTGAAGTTGGTGAAGCAGTTGGTTTATCCTCATCATCTACAATTCATGGGCACATCGAACGTTTGGTTA
AAAAGGGCTACTTACTCAAGGATGCTGCAAAACCACGTGCACGTGCAATTGAAGTAAGTGATGCCGGATTGGAAGCACTA
GGATTATCAACAACTCCTGGTCGTATTCCTGTTCTTGGGCTTGTTACAGCAGGTACACCTGTTTTAGCAGTTGAAGAAGA
AGCGACGGAGTTCTTCCCAATTCCCGATAATTTAATGCAATTTGATGGCGACATGTTCATGTTAAATGTTAAGGGAAACT
CGATGGTCAATATCGGGATTCTAGATGGTGACAAGGTAATTGTTCGTAAGCAAGACAATGCCGACAACGGTGATGTTGTC
GTTGCTATGAATGAAGATGACGAAGCCACTGTCAAACGCTTTTTCAGAGAAGCAGATCATTTCCGTTTACAACCAGAAAA
TGACGCCATGGCACCTATTATTTTAAACAATGTCTCAATTCTTGGTAAGGTCATTGGCCTTTACCGTGACGCTATTTATT
AA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(9-67)

Peptidase S24-like (Peptidase_S24)

(90-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0D6S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

55.721

94.366

0.526