Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   HTZ88_RS03205 Genome accession   NZ_CP054418
Coordinates   601323..603287 (+) Length   654 a.a.
NCBI ID   WP_305068253.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain 4010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 596323..608287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ88_RS03180 (HTZ88_03160) - 596510..597295 (+) 786 WP_172601004.1 hypothetical protein -
  HTZ88_RS03185 (HTZ88_03165) - 597470..598543 (+) 1074 WP_305068251.1 AAA family ATPase -
  HTZ88_RS03190 (HTZ88_03170) - 598639..599592 (+) 954 WP_150281063.1 2-dehydropantoate 2-reductase -
  HTZ88_RS03195 (HTZ88_03175) msrA 599646..600173 (+) 528 WP_305068252.1 peptide-methionine (S)-S-oxide reductase MsrA -
  HTZ88_RS03200 (HTZ88_03180) rnz 600346..601311 (+) 966 WP_150262396.1 ribonuclease Z -
  HTZ88_RS03205 (HTZ88_03185) recJ 601323..603287 (+) 1965 WP_305068253.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  HTZ88_RS03210 (HTZ88_03190) - 603405..603935 (+) 531 WP_150262398.1 adenine phosphoribosyltransferase -
  HTZ88_RS03215 (HTZ88_03195) - 604036..604734 (-) 699 WP_305068254.1 SAM-dependent methyltransferase -
  HTZ88_RS03220 (HTZ88_03200) - 604724..605296 (-) 573 WP_014974078.1 DsbA family protein -
  HTZ88_RS03225 (HTZ88_03205) - 605574..606152 (+) 579 WP_014974079.1 GTP pyrophosphokinase family protein -
  HTZ88_RS03230 (HTZ88_03210) - 606149..606946 (+) 798 WP_014974080.1 NAD kinase -
  HTZ88_RS03235 (HTZ88_03215) - 607003..607905 (+) 903 WP_305068255.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 71908.00 Da        Isoelectric Point: 5.0198

>NTDB_id=399668 HTZ88_RS03205 WP_305068253.1 601323..603287(+) (recJ) [Leuconostoc carnosum strain 4010]
MSQKNWHILPQPSEKSVKQLTTQLNIDHLTATIVAQKGYTTPETAFQYLQPSIEQLHDPMALHDMDKAFERLTEAAFGGE
KIVVYGDYDLDGVTSTAVMVEALEVLGADVTAYIPNRFTDGYGPNIDVYKRLIADGAQVIVTVDNGMSGHEAVAYAMSQG
VDVIITDHHEMAPTLPEAYAVIHPRHPEGHYPFHDLSGVGVAFKVAQALLTDGQAISDRSNLPTEMLDLVALGEIADMVS
LTDENRTLVSWGLKQLSTSPRPGLSALLKNAGQAANEPIISETVSFKIAPRLNAVGRLGDAKLALDLLLSQDPDEAAELA
SQIEAINAQRQEIVEEVFGAAKQMALSEAHQNDEVLIISGIDWHQGVLGIVASRLVELLHKPAIVLSLVAGNYKGSGRSY
GDFDLYALMSQYRDLYDTFGGHANALGLAISEDNLVILRQRITTLSALNIREKPVTINLTLPASDMTTSVYDGLTLLEPF
GTDNPQPVFEVKQAPITKVITMGKSKQHIKLTLNNQVDAVGFNHPDWAASMLNQKSMSFVATMGLNYFRGKKQLQLLLTD
VDLPAIVENDAHKQFFSQVYKFIYTHQDLNFAQNLDKIAKQLYINKTDLNIMVQVFIELGFVQVINSGFVKIIPNAPQRD
LTESTTYQKFLAKR

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=399668 HTZ88_RS03205 WP_305068253.1 601323..603287(+) (recJ) [Leuconostoc carnosum strain 4010]
ATGAGTCAAAAAAATTGGCATATACTACCACAACCATCTGAAAAATCCGTTAAGCAACTGACAACACAATTAAATATTGA
TCATTTAACTGCGACGATTGTCGCACAAAAAGGTTACACAACACCAGAGACGGCGTTTCAGTATTTACAACCAAGTATTG
AACAGCTTCATGATCCTATGGCACTACATGACATGGATAAAGCTTTTGAACGCTTAACTGAGGCTGCATTTGGTGGTGAA
AAGATTGTTGTTTATGGTGATTACGATTTAGATGGGGTCACAAGCACAGCAGTTATGGTGGAAGCGCTTGAAGTATTAGG
CGCCGATGTCACAGCTTATATTCCCAATCGCTTCACTGACGGTTATGGCCCCAACATTGATGTTTATAAGCGATTGATTG
CTGACGGTGCGCAAGTGATTGTGACAGTCGACAATGGTATGAGCGGGCATGAAGCCGTTGCTTATGCCATGAGTCAGGGT
GTTGATGTGATTATTACTGATCATCATGAAATGGCACCTACATTACCTGAAGCTTACGCAGTAATACATCCAAGACACCC
CGAAGGTCACTATCCATTTCATGATTTATCAGGTGTAGGCGTGGCCTTCAAGGTTGCACAAGCTTTACTGACGGATGGGC
AGGCGATTAGTGATCGCTCCAATCTACCAACGGAAATGCTTGATTTAGTAGCTTTAGGTGAAATTGCCGATATGGTTTCA
TTAACTGATGAAAATAGGACACTTGTTTCCTGGGGATTAAAGCAACTAAGTACCAGTCCACGACCAGGATTATCTGCATT
GCTCAAAAATGCTGGTCAAGCAGCCAATGAACCTATTATTTCAGAAACTGTTTCCTTTAAAATCGCGCCACGCTTAAATG
CTGTGGGACGTTTAGGGGATGCTAAATTAGCCCTTGATTTACTTTTGAGTCAAGATCCTGATGAAGCAGCGGAATTGGCA
TCACAAATTGAAGCTATTAATGCGCAACGTCAAGAAATTGTTGAAGAAGTATTTGGTGCGGCTAAGCAAATGGCTTTATC
TGAAGCACACCAAAACGACGAGGTTTTGATTATATCAGGCATTGATTGGCATCAAGGTGTTTTAGGTATTGTTGCCAGTC
GGTTAGTTGAATTATTACACAAGCCAGCCATTGTTTTAAGTTTGGTTGCTGGTAATTATAAAGGGTCTGGTCGTAGCTAT
GGTGATTTTGATCTTTATGCATTGATGAGTCAGTATCGCGATTTATATGATACCTTTGGTGGGCATGCGAATGCTTTGGG
ATTAGCGATTTCAGAAGATAATTTAGTGATATTGCGTCAGCGAATCACTACATTATCAGCACTTAACATTCGAGAAAAGC
CTGTGACAATTAATTTGACACTACCCGCAAGTGATATGACAACATCTGTTTATGATGGTTTAACGCTCTTGGAGCCATTT
GGAACCGATAACCCACAGCCGGTTTTTGAGGTTAAGCAAGCACCAATTACCAAGGTGATCACAATGGGGAAATCTAAACA
GCATATTAAGCTGACGTTGAACAACCAAGTGGACGCTGTAGGCTTTAACCATCCTGACTGGGCTGCGAGCATGCTAAATC
AAAAAAGCATGTCCTTTGTTGCGACAATGGGGTTGAACTATTTTCGTGGCAAGAAACAGCTACAATTGCTATTAACGGAT
GTTGATTTGCCAGCAATTGTTGAAAATGATGCACATAAACAATTTTTTTCGCAAGTATACAAATTTATTTACACACACCA
AGACTTGAATTTTGCGCAAAACTTGGATAAAATAGCAAAGCAACTATATATCAACAAAACTGACCTCAATATTATGGTGC
AAGTCTTTATTGAACTTGGTTTTGTGCAAGTGATTAATAGTGGGTTTGTCAAAATTATTCCTAATGCACCACAAAGAGAC
TTAACAGAGTCAACGACTTATCAAAAGTTTTTGGCGAAACGTTAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(81-233)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(573-653)

RecJ OB domain (RecJ_OB)

(457-560)

DHHA1 domain (DHHA1)

(324-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

37.983

100

0.42