Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GJE16_RS05630 Genome accession   NZ_CP045931
Coordinates   1116467..1117276 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain AUSMDU00010538     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111467..1122276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE16_RS05615 (GJE16_05615) - 1113932..1115803 (-) 1872 WP_000150985.1 Eco57I restriction-modification methylase domain-containing protein -
  GJE16_RS05620 (GJE16_05620) - 1115878..1116132 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE family toxin -
  GJE16_RS05625 (GJE16_05625) relB 1116134..1116376 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  GJE16_RS05630 (GJE16_05630) vicX 1116467..1117276 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  GJE16_RS05635 (GJE16_05635) micB 1117278..1118627 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GJE16_RS05640 (GJE16_05640) micA 1118620..1119324 (-) 705 WP_000722076.1 response regulator YycF Regulator
  GJE16_RS05645 (GJE16_05645) mutY 1119380..1120555 (-) 1176 WP_000886145.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=399407 GJE16_RS05630 WP_001289493.1 1116467..1117276(-) (vicX) [Streptococcus pneumoniae strain AUSMDU00010538]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=399407 GJE16_RS05630 WP_001289493.1 1116467..1117276(-) (vicX) [Streptococcus pneumoniae strain AUSMDU00010538]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACTTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGCACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment