Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | GJE17_RS01170 | Genome accession | NZ_CP045930 |
| Coordinates | 208298..209659 (+) | Length | 453 a.a. |
| NCBI ID | WP_002986109.1 | Uniprot ID | A0A4Q1R665 |
| Organism | Streptococcus pyogenes strain AUSMDU00010539 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 172707..208217 | 208298..209659 | flank | 81 |
Gene organization within MGE regions
Location: 172707..209659
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJE17_RS01000 (GJE17_01000) | - | 172707..173903 (+) | 1197 | WP_002986345.1 | glycine betaine/L-proline ABC transporter ATP-binding protein | - |
| GJE17_RS01005 (GJE17_01005) | - | 173919..175646 (+) | 1728 | WP_011528204.1 | ABC transporter permease/substrate binding protein | - |
| GJE17_RS01010 (GJE17_01010) | polA | 175777..178419 (+) | 2643 | WP_031488641.1 | DNA polymerase I | - |
| GJE17_RS01015 (GJE17_01015) | - | 178597..179052 (+) | 456 | WP_031488640.1 | CoA-binding protein | - |
| GJE17_RS01020 (GJE17_01020) | perR | 179104..179571 (+) | 468 | WP_031488639.1 | peroxide-responsive transcriptional repressor PerR | - |
| GJE17_RS01025 (GJE17_01025) | - | 179790..180026 (+) | 237 | WP_014635252.1 | hypothetical protein | - |
| GJE17_RS01030 (GJE17_01030) | - | 180248..181582 (+) | 1335 | WP_031488638.1 | phosphoadenosine phosphosulfate reductase | - |
| GJE17_RS01035 (GJE17_01035) | - | 181575..182105 (+) | 531 | WP_002987925.1 | IbrB-like domain-containing protein | - |
| GJE17_RS08590 | - | 182152..182301 (-) | 150 | Protein_155 | ISL3 family transposase | - |
| GJE17_RS01045 (GJE17_01045) | - | 182433..183583 (-) | 1151 | Protein_156 | IS3 family transposase | - |
| GJE17_RS01055 (GJE17_01055) | - | 183661..184971 (-) | 1311 | WP_031488784.1 | SLC13 family permease | - |
| GJE17_RS01060 (GJE17_01060) | nadC | 185195..186067 (+) | 873 | WP_031488783.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GJE17_RS01070 (GJE17_01070) | - | 187795..188658 (-) | 864 | WP_031488685.1 | DUF975 family protein | - |
| GJE17_RS08885 (GJE17_01075) | - | 188695..188880 (+) | 186 | WP_002986321.1 | hypothetical protein | - |
| GJE17_RS01080 (GJE17_01080) | tgt | 188877..190019 (+) | 1143 | WP_031488684.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| GJE17_RS01085 (GJE17_01085) | - | 190237..190548 (+) | 312 | WP_002987947.1 | CHY zinc finger protein | - |
| GJE17_RS01090 (GJE17_01090) | - | 190552..191091 (+) | 540 | WP_002986314.1 | biotin transporter BioY | - |
| GJE17_RS01095 (GJE17_01095) | - | 191231..192010 (+) | 780 | WP_011528209.1 | MBL fold metallo-hydrolase | - |
| GJE17_RS01100 (GJE17_01100) | tadA | 192010..192525 (+) | 516 | WP_002992549.1 | tRNA adenosine(34) deaminase TadA | - |
| GJE17_RS01105 (GJE17_01105) | - | 193139..194371 (-) | 1233 | WP_031488683.1 | transglutaminase domain-containing protein | - |
| GJE17_RS01115 (GJE17_01115) | speG | 194771..195475 (+) | 705 | WP_031488682.1 | streptococcal pyrogenic exotoxin SpeG | - |
| GJE17_RS01120 (GJE17_01120) | - | 195931..197280 (+) | 1350 | WP_014635263.1 | glucose-6-phosphate isomerase | - |
| GJE17_RS01125 (GJE17_01125) | - | 197629..199137 (-) | 1509 | WP_002986134.1 | helix-turn-helix domain-containing protein | - |
| GJE17_RS01130 (GJE17_01130) | - | 199825..200496 (+) | 672 | WP_031488681.1 | rhomboid family intramembrane serine protease | - |
| GJE17_RS01135 (GJE17_01135) | galU | 200595..201494 (-) | 900 | WP_002986125.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| GJE17_RS01140 (GJE17_01140) | - | 201527..202543 (-) | 1017 | WP_002986123.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| GJE17_RS01145 (GJE17_01145) | - | 202841..203290 (+) | 450 | WP_002986120.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| GJE17_RS01150 (GJE17_01150) | - | 203283..204989 (+) | 1707 | WP_031488680.1 | ABC transporter ATP-binding protein | - |
| GJE17_RS01155 (GJE17_01155) | - | 204992..206776 (+) | 1785 | WP_023610145.1 | ABC transporter ATP-binding protein | - |
| GJE17_RS01160 (GJE17_01160) | - | 206894..207661 (+) | 768 | WP_011054158.1 | epoxyqueuosine reductase QueH | - |
| GJE17_RS01165 (GJE17_01165) | - | 207771..208217 (+) | 447 | WP_002986111.1 | dUTP diphosphatase | - |
| GJE17_RS01170 (GJE17_01170) | radA | 208298..209659 (+) | 1362 | WP_002986109.1 | DNA repair protein RadA | Machinery gene |
Sequence
Protein
Download Length: 453 a.a. Molecular weight: 49386.68 Da Isoelectric Point: 6.0962
>NTDB_id=399342 GJE17_RS01170 WP_002986109.1 208298..209659(+) (radA) [Streptococcus pyogenes strain AUSMDU00010539]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAGEKSRPVKLKDVDNISYHRTQTDMSEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NIKPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNALQGIDIPQGIEVVGVTTVGQVLKAVFS
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAGEKSRPVKLKDVDNISYHRTQTDMSEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NIKPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNALQGIDIPQGIEVVGVTTVGQVLKAVFS
Nucleotide
Download Length: 1362 bp
>NTDB_id=399342 GJE17_RS01170 WP_002986109.1 208298..209659(+) (radA) [Streptococcus pyogenes strain AUSMDU00010539]
ATGGCAAAGAAAAAAGCAACCTTTATCTGTCAGGAGTGTGGCTACCAGTCGCCAAAATATTTAGGGCGCTGTCCAAATTG
CTCGGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCAAAAATGCCCGTGTTAGTCTAGCTGGAGAAAAGT
CCAGACCGGTTAAACTAAAAGATGTGGATAATATTAGTTATCACAGAACACAGACTGACATGTCTGAATTTAATAGAGTT
CTTGGAGGGGGTGTGGTTCCTGGAAGCTTGATTTTAATTGGTGGTGATCCGGGTATTGGAAAATCCACCTTACTCTTGCA
GGTATCCACGCAGCTCGCTAATAAGGGAACGGTTCTCTATGTGTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAGCGTCTGGGTGATATTGACAATGAATTTTACCTCTATGCCGAAACCAATATGCAAGCTATTCGCACAGAAATTGAA
AATATTAAACCAGATTTTTTAATTATTGACTCCATTCAGACCATCATGAGCCCTGATATTACAGGTGTTCAAGGATCAGT
CAGTCAGGTGAGAGAAGTCACTGCAGAATTGATGCAGCTTGCAAAGACGAACAATATTGCAACCTTTATTGTGGGTCATG
TCACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGTTAGAACACATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCACACCTTTCGCATTCTTCGGGCTGTGAAAAACCGCTTTGGCTCCACTAACGAGATCGGCATCTTTGAAATGCAGTC
TGGCGGCTTGGTAGAGGTCTTAAATCCTAGTCAAGTCTTTTTAGAGGAACGCTTAGATGGGGCAACAGGATCGGCTGTCG
TTGTAACGATGGAAGGAAGTCGTCCTATCTTAGCAGAGGTGCAATCTTTAGTGACACCAACCGTTTTTGGCAATGCCAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATAATGGCAGTTTTAGAAAAGCGCTGTGGTTTACTCTTACA
AAATCAAGATGCCTACCTCAAGTCGGCTGGTGGTGTCAAACTAGACGAACCTGCCATTGATTTGGCAGTCGCTGTGGCTA
TCGCATCCAGTTATAAGGAAAAACCAACCAGCCCTCAAGAAGCTTTCTTAGGCGAGATCGGGTTAACAGGTGAGATTCGG
CGAGTGACCCGTATTGAGCAACGGATTAATGAAGCAGCAAAGCTTGGATTTACCAAGGTCTATGCTCCTAAAAATGCCTT
GCAAGGCATTGATATCCCTCAAGGTATTGAGGTTGTCGGAGTGACTACGGTTGGTCAGGTTTTAAAGGCAGTTTTTAGCT
AG
ATGGCAAAGAAAAAAGCAACCTTTATCTGTCAGGAGTGTGGCTACCAGTCGCCAAAATATTTAGGGCGCTGTCCAAATTG
CTCGGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCAAAAATGCCCGTGTTAGTCTAGCTGGAGAAAAGT
CCAGACCGGTTAAACTAAAAGATGTGGATAATATTAGTTATCACAGAACACAGACTGACATGTCTGAATTTAATAGAGTT
CTTGGAGGGGGTGTGGTTCCTGGAAGCTTGATTTTAATTGGTGGTGATCCGGGTATTGGAAAATCCACCTTACTCTTGCA
GGTATCCACGCAGCTCGCTAATAAGGGAACGGTTCTCTATGTGTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAGCGTCTGGGTGATATTGACAATGAATTTTACCTCTATGCCGAAACCAATATGCAAGCTATTCGCACAGAAATTGAA
AATATTAAACCAGATTTTTTAATTATTGACTCCATTCAGACCATCATGAGCCCTGATATTACAGGTGTTCAAGGATCAGT
CAGTCAGGTGAGAGAAGTCACTGCAGAATTGATGCAGCTTGCAAAGACGAACAATATTGCAACCTTTATTGTGGGTCATG
TCACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGTTAGAACACATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCACACCTTTCGCATTCTTCGGGCTGTGAAAAACCGCTTTGGCTCCACTAACGAGATCGGCATCTTTGAAATGCAGTC
TGGCGGCTTGGTAGAGGTCTTAAATCCTAGTCAAGTCTTTTTAGAGGAACGCTTAGATGGGGCAACAGGATCGGCTGTCG
TTGTAACGATGGAAGGAAGTCGTCCTATCTTAGCAGAGGTGCAATCTTTAGTGACACCAACCGTTTTTGGCAATGCCAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATAATGGCAGTTTTAGAAAAGCGCTGTGGTTTACTCTTACA
AAATCAAGATGCCTACCTCAAGTCGGCTGGTGGTGTCAAACTAGACGAACCTGCCATTGATTTGGCAGTCGCTGTGGCTA
TCGCATCCAGTTATAAGGAAAAACCAACCAGCCCTCAAGAAGCTTTCTTAGGCGAGATCGGGTTAACAGGTGAGATTCGG
CGAGTGACCCGTATTGAGCAACGGATTAATGAAGCAGCAAAGCTTGGATTTACCAAGGTCTATGCTCCTAAAAATGCCTT
GCAAGGCATTGATATCCCTCAAGGTATTGAGGTTGTCGGAGTGACTACGGTTGGTCAGGTTTTAAAGGCAGTTTTTAGCT
AG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus mitis NCTC 12261 |
85.872 |
100 |
0.859 |
| radA | Streptococcus pneumoniae D39 |
85.651 |
100 |
0.857 |
| radA | Streptococcus pneumoniae R6 |
85.651 |
100 |
0.857 |
| radA | Streptococcus pneumoniae Rx1 |
85.651 |
100 |
0.857 |
| radA | Streptococcus mitis SK321 |
85.651 |
100 |
0.857 |
| radA | Streptococcus pneumoniae TIGR4 |
85.651 |
100 |
0.857 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
61.369 |
100 |
0.614 |