Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   GJE18_RS08165 Genome accession   NZ_CP045927
Coordinates   1599719..1600441 (+) Length   240 a.a.
NCBI ID   WP_085622894.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain 1379     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1594719..1605441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE18_RS12265 - 1595079..1596068 (-) 990 WP_275087479.1 hypothetical protein -
  GJE18_RS08145 (GJE18_08100) - 1596239..1597036 (+) 798 WP_107368990.1 carbon-nitrogen family hydrolase -
  GJE18_RS08150 (GJE18_08105) - 1597684..1598247 (+) 564 WP_107368991.1 accessory gene regulator AgrB -
  GJE18_RS08155 (GJE18_08110) agrD 1598250..1598384 (+) 135 WP_107368992.1 cyclic lactone autoinducer peptide AgrD -
  GJE18_RS08160 (GJE18_08115) agrC 1598407..1599705 (+) 1299 WP_165805183.1 quorum-sensing sensor histidine kinase AgrC -
  GJE18_RS08165 (GJE18_08120) agrA 1599719..1600441 (+) 723 WP_085622894.1 quorum-sensing response regulator AgrA Regulator
  GJE18_RS08170 (GJE18_08125) - 1600508..1601998 (-) 1491 WP_165886130.1 sucrose-6-phosphate hydrolase -
  GJE18_RS08175 (GJE18_08130) - 1602351..1602578 (-) 228 WP_060551494.1 sulfurtransferase TusA family protein -
  GJE18_RS08180 (GJE18_08135) - 1602601..1603686 (-) 1086 WP_107369008.1 YeeE/YedE family protein -
  GJE18_RS08185 (GJE18_08140) - 1603869..1604504 (-) 636 WP_037567012.1 redox-sensing transcriptional repressor Rex -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28212.36 Da        Isoelectric Point: 5.4121

>NTDB_id=399317 GJE18_RS08165 WP_085622894.1 1599719..1600441(+) (agrA) [Staphylococcus agnetis strain 1379]
MKILICEDDPKQRERMESIIQNYIMIEEKPMEIEISTSDPYALLEASKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDIDELRTRIIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDGRFFRCHNSFVLNRHNITHVDAKERIVYFKNDEFCYVSVRNIKKIKK

Nucleotide


Download         Length: 723 bp        

>NTDB_id=399317 GJE18_RS08165 WP_085622894.1 1599719..1600441(+) (agrA) [Staphylococcus agnetis strain 1379]
TTGAAAATTTTAATTTGTGAGGATGACCCTAAACAAAGAGAACGAATGGAATCCATCATTCAGAATTACATTATGATTGA
AGAAAAGCCTATGGAAATTGAAATTTCTACTAGTGACCCCTATGCGTTACTTGAGGCATCCAAAAATATGACTGATATTG
GTTGTTATTTTTTAGACATCCAATTGGAATCAGATATTAATGGTATTAAGCTTGGTAGCGAAATTCGAAAACATGATCCT
GTAGGTAATATTATTTTTGTAACCAGTCATAGTGAATTAACCTATTTAACTTTCGTGTATAAACTTGCAGCAATGGATTT
TATTTTTAAAGATGACATTGATGAGTTACGTACGAGAATTATTGATTGTCTCGAAACAGCACTTAAGCGGTTAGATTTAT
TAACAAAAGATAACACAGTAGAAACAATGGAATTAAAACAAGGCAGTAATTCTGTCTATGTTAACTATGATGATGTTATG
TTTTTTGAATCTTCACCTAAATCACATCGTTTGATTGCACATTTAGATAATCGGCAAATTGAATTTTATGGTAATTTAAG
AGAGCTCGCACAAATTGATGGTCGTTTTTTTAGATGTCATAATAGTTTTGTGTTAAATCGACATAACATTACGCATGTTG
ATGCTAAAGAGCGCATTGTTTATTTTAAAAATGATGAATTTTGCTATGTGTCTGTAAGAAATATAAAAAAAATCAAGAAA
TAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813

Multiple sequence alignment