Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   GJE18_RS07845 Genome accession   NZ_CP045927
Coordinates   1537552..1538595 (-) Length   347 a.a.
NCBI ID   WP_037566929.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain 1379     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1532552..1543595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE18_RS07815 (GJE18_07775) - 1533792..1534001 (-) 210 WP_060551425.1 DUF1128 domain-containing protein -
  GJE18_RS07820 (GJE18_07780) - 1534134..1534592 (+) 459 WP_060551426.1 low molecular weight protein-tyrosine-phosphatase -
  GJE18_RS07825 (GJE18_07785) - 1534600..1534875 (+) 276 WP_037566921.1 hypothetical protein -
  GJE18_RS07830 (GJE18_07790) - 1534991..1536262 (+) 1272 WP_060551427.1 YihY/virulence factor BrkB family protein -
  GJE18_RS07835 (GJE18_07795) - 1536298..1536867 (+) 570 WP_037566924.1 beta-class carbonic anhydrase -
  GJE18_RS07840 (GJE18_07800) vraR 1536933..1537562 (-) 630 WP_037566926.1 response regulator transcription factor Regulator
  GJE18_RS07845 (GJE18_07805) vraS 1537552..1538595 (-) 1044 WP_037566929.1 sensor histidine kinase Regulator
  GJE18_RS07850 (GJE18_07810) liaF 1538592..1539293 (-) 702 WP_060551429.1 cell wall-active antibiotics response protein LiaF -
  GJE18_RS07855 (GJE18_07815) - 1539306..1539692 (-) 387 WP_103345098.1 hypothetical protein -
  GJE18_RS07860 (GJE18_07820) map 1539791..1540549 (-) 759 WP_103345099.1 type I methionyl aminopeptidase -
  GJE18_RS07865 (GJE18_07825) - 1540722..1541096 (+) 375 WP_168429127.1 YkvA family protein -
  GJE18_RS07870 (GJE18_07830) - 1541216..1542247 (+) 1032 WP_060551432.1 FUSC family protein -
  GJE18_RS07875 (GJE18_07835) - 1542348..1543079 (-) 732 WP_060551433.1 type 1 glutamine amidotransferase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39917.91 Da        Isoelectric Point: 4.8594

>NTDB_id=399316 GJE18_RS07845 WP_037566929.1 1537552..1538595(-) (vraS) [Staphylococcus agnetis strain 1379]
MNQYVRSIGSMLILVYSLFTAFFFIDNVFTNIIFFQGMFYTQIFGIPVFLFLNLITIFLCIIVGSVLAYKNNQQNDWLKV
QIERAIEGETVGVNDQQIEIYQETLELYEALVPLNQELHRMRIKTQNLTNESYNINDSKVQKIIEDERHRLARELHDSVS
QQLFAASMMLSAIKETPLEPPLNQQIPTLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIQSLVTDLQRKVPLKVVQDI
GEFDVPKGMEDHLFRITQEAISNTLRHSKGTEVTVELLQREDYILLRIQDDGIGFNVDDKMEQSYGLKNMRERAMEIGAT
FHIVSLPDSGTRIEVKAPLDKEGHNDN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=399316 GJE18_RS07845 WP_037566929.1 1537552..1538595(-) (vraS) [Staphylococcus agnetis strain 1379]
ATGAATCAATACGTACGATCGATAGGTTCAATGCTTATATTAGTGTATAGCTTATTTACAGCTTTCTTCTTTATAGACAA
TGTATTTACGAATATTATTTTCTTTCAAGGTATGTTTTATACACAAATTTTTGGTATACCTGTGTTTCTGTTTTTAAATC
TTATTACCATATTTTTGTGTATTATTGTTGGAAGTGTACTTGCATATAAAAATAATCAACAAAATGATTGGCTTAAAGTT
CAAATTGAACGTGCGATTGAAGGGGAAACCGTTGGTGTAAATGATCAACAAATTGAAATTTACCAAGAAACATTAGAGCT
TTACGAAGCACTCGTGCCACTGAATCAAGAGTTACATCGCATGCGTATTAAAACGCAAAATTTAACGAATGAATCGTATA
ATATCAATGATTCAAAAGTACAAAAAATTATCGAGGATGAACGTCATCGACTTGCTAGAGAACTTCATGACAGTGTGTCA
CAACAATTATTTGCGGCAAGTATGATGCTTTCTGCAATTAAAGAAACGCCTCTAGAACCCCCATTAAATCAACAAATTCC
GACGCTTGAAAAAATGGTGCAAGATTCACAATTAGAAATGCGCGCGCTGTTATTACATTTAAGACCGATAGGCTTGAAAG
ATAAATCATTAGGTGAAGGTATTCAATCTTTAGTGACGGATTTACAACGTAAAGTTCCATTGAAAGTAGTTCAAGATATC
GGTGAGTTTGATGTACCTAAGGGAATGGAAGACCATTTATTTAGAATTACACAAGAAGCGATTTCTAATACACTCCGTCA
TTCAAAAGGGACTGAAGTGACGGTGGAATTGTTACAACGAGAAGATTACATATTGCTACGCATTCAAGATGATGGTATCG
GATTTAATGTTGATGATAAGATGGAACAAAGTTATGGATTGAAAAATATGCGTGAACGTGCAATGGAAATTGGCGCGACA
TTTCATATCGTATCATTACCGGATTCAGGTACTCGAATTGAAGTGAAAGCACCATTAGATAAGGAGGGACATAATGACAA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

82.133

100

0.821


Multiple sequence alignment