Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | GI367_RS15845 | Genome accession | NZ_CP045926 |
| Coordinates | 3255372..3257807 (+) | Length | 811 a.a. |
| NCBI ID | WP_007615223.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain AL7 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3250372..3262807
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GI367_RS15830 (GI367_15830) | ctsR | 3253249..3253713 (+) | 465 | WP_003156396.1 | transcriptional regulator CtsR | - |
| GI367_RS15835 (GI367_15835) | - | 3253727..3254284 (+) | 558 | WP_029325704.1 | UvrB/UvrC motif-containing protein | - |
| GI367_RS15840 (GI367_15840) | - | 3254284..3255375 (+) | 1092 | WP_007615222.1 | protein arginine kinase | - |
| GI367_RS15845 (GI367_15845) | clpC | 3255372..3257807 (+) | 2436 | WP_007615223.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| GI367_RS15850 (GI367_15850) | radA | 3257901..3259280 (+) | 1380 | WP_007615224.1 | DNA repair protein RadA | Machinery gene |
| GI367_RS15855 (GI367_15855) | disA | 3259284..3260366 (+) | 1083 | WP_007615225.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| GI367_RS15860 (GI367_15860) | - | 3260480..3261580 (+) | 1101 | WP_003156403.1 | PIN/TRAM domain-containing protein | - |
| GI367_RS15865 (GI367_15865) | ispD | 3261593..3262291 (+) | 699 | WP_007615226.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| GI367_RS15870 (GI367_15870) | ispF | 3262284..3262760 (+) | 477 | WP_003156407.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90191.61 Da Isoelectric Point: 5.8528
>NTDB_id=399284 GI367_RS15845 WP_007615223.1 3255372..3257807(+) (clpC) [Bacillus velezensis strain AL7]
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
Nucleotide
Download Length: 2436 bp
>NTDB_id=399284 GI367_RS15845 WP_007615223.1 3255372..3257807(+) (clpC) [Bacillus velezensis strain AL7]
ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATACTATTAGGGTTAGTCCGTGAAGGTGAAGGGATCGCATTTAAAGCTTTAGAAGCACTGG
GCCTTAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATCGGTCGAGGGCAGGAAAGCACCACCTCTGTTCCTCAT
TACACACCTCGAGCCAAAAAGGTAATAGAGTTATCAATGGATGAAGCCAGAAAGCTAGGACATTCTTATGTGGGAACAGA
ACACATACTTCTCGGACTGATTCGTGAAGGAGAAGGCGTGGCCGCGAGAGTTCTGAACAATCTCGGTGTCAGCTTGAATA
AGGCGAGACAGCAAGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGATCTTCTGCATCCGGTACGAACAGCAATGCAAAC
ACGCCGACGCTTGACAGCTTGGCTCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACGAAGAATAATCCCGTTCTTATCGGAGAACCGGGTGTAG
GTAAGACTGCGATTGCTGAAGGCCTCGCACAGCAGATCATCAATAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACATTAGACATGGGTACGGTTGTAGCTGGTACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATACACTGATCGGAGCGGGGGGAGCAGAAGGTG
CGATTGACGCATCGAATATCTTAAAACCTTCACTGGCCCGCGGAGAGCTCCAATGCATCGGTGCGACAACGCTTGATGAA
TACCGTAAATATATCGAAAAAGACGCCGCTCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATCAGCCGTCAGCCGATGA
AAGCATTCAAATTTTAAAAGGGCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CGGCGGTTAAATTGTCCGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACACCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAGAGCCAGGAGTTTGAAAAAGCGGCTTCCCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGACACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATTGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAAAACATTCT
GCACTCCCGCGTCATCGGCCAGGATGAAGCTGTTGTAGCCGTTGCAAAGGCTGTCAGACGTGCAAGAGCCGGTCTGAAGG
ACCCGAAACGCCCGATTGGTTCATTCATCTTCTTAGGCCCTACAGGCGTTGGGAAGACAGAGCTGGCACGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACACTCGACTTCACGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATACTCCTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTGGATTTCCGCAACACGATCCTGATTATGACGTCAAATGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTGGGCTTCAATGTGCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGC
TGCAAAAGCAAAAGTGGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGGTTATCAGAAGAACTCCTCAGAGGCAATATTGATAAGGGCCAGCACATTGTTCTTGATGTTGAGGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATACTATTAGGGTTAGTCCGTGAAGGTGAAGGGATCGCATTTAAAGCTTTAGAAGCACTGG
GCCTTAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATCGGTCGAGGGCAGGAAAGCACCACCTCTGTTCCTCAT
TACACACCTCGAGCCAAAAAGGTAATAGAGTTATCAATGGATGAAGCCAGAAAGCTAGGACATTCTTATGTGGGAACAGA
ACACATACTTCTCGGACTGATTCGTGAAGGAGAAGGCGTGGCCGCGAGAGTTCTGAACAATCTCGGTGTCAGCTTGAATA
AGGCGAGACAGCAAGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGATCTTCTGCATCCGGTACGAACAGCAATGCAAAC
ACGCCGACGCTTGACAGCTTGGCTCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACGAAGAATAATCCCGTTCTTATCGGAGAACCGGGTGTAG
GTAAGACTGCGATTGCTGAAGGCCTCGCACAGCAGATCATCAATAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACATTAGACATGGGTACGGTTGTAGCTGGTACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATACACTGATCGGAGCGGGGGGAGCAGAAGGTG
CGATTGACGCATCGAATATCTTAAAACCTTCACTGGCCCGCGGAGAGCTCCAATGCATCGGTGCGACAACGCTTGATGAA
TACCGTAAATATATCGAAAAAGACGCCGCTCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATCAGCCGTCAGCCGATGA
AAGCATTCAAATTTTAAAAGGGCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CGGCGGTTAAATTGTCCGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACACCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAGAGCCAGGAGTTTGAAAAAGCGGCTTCCCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGACACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATTGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAAAACATTCT
GCACTCCCGCGTCATCGGCCAGGATGAAGCTGTTGTAGCCGTTGCAAAGGCTGTCAGACGTGCAAGAGCCGGTCTGAAGG
ACCCGAAACGCCCGATTGGTTCATTCATCTTCTTAGGCCCTACAGGCGTTGGGAAGACAGAGCTGGCACGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACACTCGACTTCACGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATACTCCTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTGGATTTCCGCAACACGATCCTGATTATGACGTCAAATGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTGGGCTTCAATGTGCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGC
TGCAAAAGCAAAAGTGGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGGTTATCAGAAGAACTCCTCAGAGGCAATATTGATAAGGGCCAGCACATTGTTCTTGATGTTGAGGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
97.041 |
100 |
0.97 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.688 |
98.767 |
0.491 |
| clpC | Streptococcus thermophilus LMD-9 |
46.238 |
100 |
0.47 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.995 |
100 |
0.467 |
| clpC | Streptococcus pneumoniae Rx1 |
45.141 |
100 |
0.453 |
| clpC | Streptococcus pneumoniae D39 |
45.141 |
100 |
0.453 |
| clpC | Streptococcus mutans UA159 |
44.203 |
100 |
0.451 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.895 |
100 |
0.45 |
| clpE | Streptococcus mutans UA159 |
53.313 |
80.025 |
0.427 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.709 |
84.834 |
0.422 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.388 |
80.025 |
0.419 |
| clpE | Streptococcus pneumoniae Rx1 |
52.388 |
80.025 |
0.419 |
| clpE | Streptococcus pneumoniae D39 |
52.388 |
80.025 |
0.419 |
| clpE | Streptococcus pneumoniae R6 |
52.388 |
80.025 |
0.419 |