Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E2126_RS01920 Genome accession   NZ_CP054388
Coordinates   399331..399846 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain 1517k     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 394331..404846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2126_RS01875 (E2126_001870) csrA 395212..395397 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  E2126_RS01905 (E2126_001900) yqaB 396561..397127 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  E2126_RS01910 (E2126_001905) yqaA 397124..397552 (+) 429 WP_001287454.1 YqaA family protein -
  E2126_RS01915 (E2126_001910) gshA 397625..399181 (+) 1557 WP_000611781.1 glutamate--cysteine ligase -
  E2126_RS01920 (E2126_001915) luxS 399331..399846 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  E2126_RS01925 (E2126_001920) emrB 399910..401448 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  E2126_RS01930 (E2126_001925) emrA 401465..402637 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  E2126_RS01935 (E2126_001930) emrR 402764..403294 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  E2126_RS01940 (E2126_001935) ygaH 403385..403720 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  E2126_RS01945 (E2126_001940) ygaZ 403710..404447 (-) 738 WP_000445648.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=399262 E2126_RS01920 WP_001130208.1 399331..399846(+) (luxS) [Escherichia coli strain 1517k]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=399262 E2126_RS01920 WP_001130208.1 399331..399846(+) (luxS) [Escherichia coli strain 1517k]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737