Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   GI367_RS08835 Genome accession   NZ_CP045926
Coordinates   1882062..1882814 (-) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus velezensis strain AL7     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1877062..1887814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GI367_RS08810 (GI367_08810) mreC 1877498..1878361 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  GI367_RS08815 (GI367_08815) mreB 1878392..1879405 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  GI367_RS08820 (GI367_08820) radC 1879497..1880192 (-) 696 WP_007408165.1 RadC family protein -
  GI367_RS08825 (GI367_08825) - 1880224..1880793 (-) 570 WP_029326048.1 Maf family protein -
  GI367_RS08830 (GI367_08830) - 1880934..1881935 (-) 1002 WP_029326047.1 SPOR domain-containing protein -
  GI367_RS08835 (GI367_08835) comC 1882062..1882814 (-) 753 WP_012118107.1 prepilin peptidase Machinery gene
  GI367_RS08840 (GI367_08840) - 1882954..1884246 (-) 1293 WP_007612876.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  GI367_RS08845 (GI367_08845) - 1884305..1886947 (-) 2643 WP_007612877.1 valine--tRNA ligase -
  GI367_RS08850 (GI367_08850) - 1887400..1887591 (+) 192 WP_007612879.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=399260 GI367_RS08835 WP_012118107.1 1882062..1882814(-) (comC) [Bacillus velezensis strain AL7]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=399260 GI367_RS08835 WP_012118107.1 1882062..1882814(-) (comC) [Bacillus velezensis strain AL7]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGTCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment