Detailed information NTG0399259

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E2126_RS01645
• Genome accession: NZ_CP054388
• Coordinates: 348837..349829 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1517k
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 343837..354829

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E2126_RS01615 (E2126_001610)	ispD	343898..344608 (+)	711	WP_000246153.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
E2126_RS01620 (E2126_001615)	ispF	344608..345087 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E2126_RS01625 (E2126_001620)	truD	345084..346133 (+)	1050	WP_000568908.1	tRNA pseudouridine(13) synthase TruD	-
E2126_RS01630 (E2126_001625)	surE	346114..346875 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
E2126_RS01635 (E2126_001630)	pcm	346869..347495 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
E2126_RS01640 (E2126_001635)	nlpD	347680..348774 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
E2126_RS01645 (E2126_001640)	rpoS	348837..349829 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
E2126_RS01650 (E2126_001645)	-	349950..350357 (-)	408	WP_001208071.1	MarR family transcriptional regulator	-
E2126_RS01655 (E2126_001650)	-	350504..351097 (+)	594	WP_001237173.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
E2126_RS01660 (E2126_001655)	-	351097..352524 (+)	1428	WP_000863203.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
E2126_RS01665 (E2126_001660)	-	352535..352771 (+)	237	WP_000562981.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
E2126_RS01670 (E2126_001665)	pphB	352813..353469 (-)	657	WP_001141294.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=399259 E2126_RS01645 WP_000081550.1 348837..349829(+) (rpoS) [Escherichia coli strain 1517k]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=399259 E2126_RS01645 WP_000081550.1 348837..349829(+) (rpoS) [Escherichia coli strain 1517k]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCTTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715