Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GI367_RS08045 Genome accession   NZ_CP045926
Coordinates   1733625..1734392 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain AL7     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1728625..1739392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GI367_RS08025 (GI367_08025) - 1728827..1729639 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  GI367_RS08030 (GI367_08030) ccpN 1729665..1730303 (-) 639 WP_007612649.1 transcriptional regulator CcpN -
  GI367_RS08035 (GI367_08035) glyS 1730404..1732443 (-) 2040 WP_007612651.1 glycine--tRNA ligase subunit beta -
  GI367_RS08040 (GI367_08040) glyQ 1732436..1733323 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  GI367_RS08045 (GI367_08045) recO 1733625..1734392 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  GI367_RS08050 (GI367_08050) - 1734429..1734572 (-) 144 WP_007408286.1 YqzL family protein -
  GI367_RS08055 (GI367_08055) era 1734728..1735633 (-) 906 WP_007612653.1 GTPase Era -
  GI367_RS08060 (GI367_08060) - 1735614..1736024 (-) 411 WP_003152976.1 cytidine deaminase -
  GI367_RS08065 (GI367_08065) - 1736148..1736522 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  GI367_RS08070 (GI367_08070) ybeY 1736503..1736976 (-) 474 WP_007612655.1 rRNA maturation RNase YbeY -
  GI367_RS08075 (GI367_08075) - 1736977..1739109 (-) 2133 WP_007612656.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=399253 GI367_RS08045 WP_007408287.1 1733625..1734392(-) (recO) [Bacillus velezensis strain AL7]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=399253 GI367_RS08045 WP_007408287.1 1733625..1734392(-) (recO) [Bacillus velezensis strain AL7]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAGCGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment