Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GI367_RS03360 Genome accession   NZ_CP045926
Coordinates   639024..639308 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain AL7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 634024..644308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GI367_RS03340 (GI367_03340) - 635267..636175 (+) 909 WP_007611143.1 ketopantoate reductase family protein -
  GI367_RS03345 (GI367_03345) - 636206..637438 (-) 1233 WP_007611144.1 aminopeptidase -
  GI367_RS03350 (GI367_03350) - 637539..637673 (-) 135 WP_003154559.1 protein YkpC -
  GI367_RS03355 (GI367_03355) mreBH 637745..638752 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  GI367_RS03360 (GI367_03360) abrB 639024..639308 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GI367_RS03365 (GI367_03365) - 639481..640785 (+) 1305 WP_029325885.1 ATP-binding protein -
  GI367_RS03370 (GI367_03370) - 640787..641614 (+) 828 WP_007611149.1 gamma-glutamylcyclotransferase -
  GI367_RS03375 (GI367_03375) ktrC 641655..642320 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  GI367_RS03380 (GI367_03380) ade 642469..644202 (+) 1734 WP_007611150.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=399237 GI367_RS03360 WP_003154557.1 639024..639308(+) (abrB) [Bacillus velezensis strain AL7]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=399237 GI367_RS03360 WP_003154557.1 639024..639308(+) (abrB) [Bacillus velezensis strain AL7]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment