Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   DEIPR_RS08140 Genome accession   NC_015161
Coordinates   1713710..1714297 (-) Length   195 a.a.
NCBI ID   WP_013615349.1    Uniprot ID   F0RKG2
Organism   Deinococcus proteolyticus MRP     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1708710..1719297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPR_RS08115 (Deipr_1598) - 1708912..1709460 (-) 549 WP_013615344.1 RNA 2'-phosphotransferase -
  DEIPR_RS08120 (Deipr_1599) - 1709457..1710467 (-) 1011 WP_013615345.1 DUF4357 domain-containing protein -
  DEIPR_RS08125 (Deipr_1600) metK 1710667..1711893 (+) 1227 WP_013615346.1 methionine adenosyltransferase -
  DEIPR_RS08130 (Deipr_1601) - 1712026..1712565 (+) 540 WP_013615347.1 phosphoribosyltransferase family protein -
  DEIPR_RS08135 (Deipr_1602) - 1712669..1713559 (+) 891 WP_013615348.1 hypothetical protein -
  DEIPR_RS08140 (Deipr_1603) ddrB 1713710..1714297 (-) 588 WP_013615349.1 single-stranded DNA-binding protein Machinery gene
  DEIPR_RS08145 (Deipr_1604) - 1714363..1715061 (-) 699 WP_013615350.1 SDR family oxidoreductase -
  DEIPR_RS08150 (Deipr_1605) - 1715072..1716097 (-) 1026 WP_013615351.1 asparaginase -
  DEIPR_RS13950 (Deipr_1606) - 1716128..1716304 (-) 177 WP_013615352.1 hypothetical protein -
  DEIPR_RS08155 (Deipr_1607) - 1716335..1718047 (-) 1713 WP_013615353.1 M3 family oligoendopeptidase -
  DEIPR_RS08160 (Deipr_1608) - 1718099..1718869 (+) 771 WP_013615354.1 metallophosphoesterase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21387.94 Da        Isoelectric Point: 7.4686

>NTDB_id=39922 DEIPR_RS08140 WP_013615349.1 1713710..1714297(-) (ddrB) [Deinococcus proteolyticus MRP]
MLHIEFITDLGAKVTVDVERPEQVLDVQRHYGRLGWTSGEVPAGGFVFPLDNEPDFDWALIGARAWTNPEGEVMILHRGH
AYRRRELEAVDSRKLKLPKAVKYSRGAKPTDPEHLREKADGEIEYVTLAIFRGGKRQDRFAVPQGQTAASGGAREARPAQ
ANQANQANRAAAAQASQRPAPRAAAAAPAEDDTPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=39922 DEIPR_RS08140 WP_013615349.1 1713710..1714297(-) (ddrB) [Deinococcus proteolyticus MRP]
ATGCTGCACATTGAATTCATCACCGACCTGGGGGCCAAAGTCACGGTGGACGTGGAGCGTCCCGAACAGGTGCTGGACGT
TCAGCGCCACTACGGCCGCCTGGGCTGGACCTCGGGCGAGGTGCCGGCTGGGGGCTTCGTCTTCCCGCTGGACAACGAAC
CCGACTTCGACTGGGCGCTGATCGGCGCCCGCGCCTGGACCAACCCGGAAGGCGAGGTTATGATTCTGCACCGGGGCCAT
GCCTACCGCCGCCGCGAGCTGGAAGCGGTAGACAGCCGCAAGCTGAAACTGCCCAAAGCCGTCAAGTACAGCCGTGGTGC
TAAGCCCACCGACCCCGAGCACCTGCGCGAAAAGGCCGACGGCGAAATCGAGTACGTGACCCTGGCCATTTTCCGTGGCG
GCAAGCGCCAGGACCGCTTCGCCGTGCCGCAGGGCCAGACTGCCGCAAGCGGCGGGGCGCGTGAAGCCCGCCCGGCACAG
GCGAACCAAGCGAACCAGGCGAACCGTGCGGCCGCTGCTCAGGCGAGTCAGCGCCCCGCCCCCCGCGCCGCCGCTGCTGC
CCCCGCCGAGGACGACACTCCCTTCTAA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0RKG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

70.659

85.641

0.605

Multiple sequence alignment