Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   GIG89_RS09585 Genome accession   NZ_CP045924
Coordinates   1904459..1905502 (-) Length   347 a.a.
NCBI ID   WP_153925461.1    Uniprot ID   -
Organism   Lactococcus petauri strain CF11     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1899459..1910502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIG89_RS09570 rpsB 1899492..1900265 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  GIG89_RS09575 - 1900538..1901578 (+) 1041 WP_019291938.1 lactonase family protein -
  GIG89_RS09580 adhE 1901734..1904427 (+) 2694 WP_019291939.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  GIG89_RS09585 sepM 1904459..1905502 (-) 1044 WP_153925461.1 SepM family pheromone-processing serine protease Regulator
  GIG89_RS09590 coaD 1905492..1905989 (-) 498 WP_019291941.1 pantetheine-phosphate adenylyltransferase -
  GIG89_RS09595 rsmD 1905979..1906518 (-) 540 WP_019293304.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GIG89_RS09600 - 1906617..1907963 (-) 1347 WP_003133148.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37787.15 Da        Isoelectric Point: 7.9913

>NTDB_id=399209 GIG89_RS09585 WP_153925461.1 1904459..1905502(-) (sepM) [Lactococcus petauri strain CF11]
MKNEKIKKHKKLKLFFAIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATVVSSEEMTGGMTNQQFDLVNQFYMQTAQNTAIYQAFKLAGKLYEMKYQGVYVLSITEDSTFKNALQLSDTITA
VNGHTFKSSTEMIDYVSQQKVGDNVTIKYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNAGAKIFLCPDETEEQTKASGTTNNYTDAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=399209 GIG89_RS09585 WP_153925461.1 1904459..1905502(-) (sepM) [Lactococcus petauri strain CF11]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCATCGCGCTACCGCTTCTTATTGTAGTGGG
TTTATTCTTCCCCTTACCTTACTATATCGAGCAGCCAGGAGGAACCATTCCAGTTAACCAAATGGTTGATGTTGCAGGGA
AAAAAGACGAACATAAAGGCAACTTTTATTTAACGACAGTTGAAATGGTTCGCGCCAATGCAGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTGTTGTGAGTAGTGAAGAGATGACGGGTGGAATGACCAATCAGCAATTTGACTTGGTCAA
CCAGTTTTATATGCAGACAGCGCAAAACACGGCTATTTATCAGGCCTTTAAGTTGGCAGGGAAACTTTATGAGATGAAGT
ATCAAGGTGTTTATGTTTTGAGCATCACTGAGGATTCAACCTTTAAAAATGCCTTACAACTTTCAGATACGATAACGGCA
GTTAATGGACATACTTTCAAATCTTCAACTGAGATGATTGATTATGTATCGCAACAAAAAGTTGGGGATAACGTTACCAT
CAAATATACACGTGTGGATGGCAGTAATCATGAAGCCACAGGTAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GTATTGGTTTAGTAGATCATACCCAGGTTGTGACAGACCCTAAAGTTAAAATCGATGCTGGAAGTATTGGCGGGCCAAGT
GCTGGTATGATGTTTACCTTGGAAATATATAGCCAAATTACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAGGATGGCAGCATCGGGCAAATAGGTGGCGTTGATAAAAAAGTTGCTACAGCAAGTAATGCGGGCG
CAAAAATTTTCCTTTGCCCAGATGAAACGGAAGAACAGACAAAGGCTTCTGGTACAACAAATAACTACACAGATGCACTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATTGTACCTGTAAAGACAATTCAAGATGCGCTAGATTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)

PDZ domain (PDZ_2)

(134-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.991

100

0.49

Multiple sequence alignment