Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   GII87_RS13125 Genome accession   NZ_CP045922
Coordinates   2517607..2518410 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain P8_B1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2512607..2523410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII87_RS13100 (GII87_13100) glpQB 2513753..2514484 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  GII87_RS13105 (GII87_13105) yqiI 2514563..2515183 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  GII87_RS13110 (GII87_13110) yqiH 2515198..2515491 (-) 294 WP_003230284.1 lipoprotein -
  GII87_RS13115 (GII87_13115) - 2515799..2515951 (+) 153 WP_003230276.1 hypothetical protein -
  GII87_RS13120 (GII87_13120) yqiG 2516024..2517142 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  GII87_RS13125 (GII87_13125) spo0A 2517607..2518410 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  GII87_RS13130 (GII87_13130) spoIVB 2518686..2519966 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  GII87_RS13135 (GII87_13135) recN 2520141..2521871 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  GII87_RS13140 (GII87_13140) argR 2521908..2522357 (-) 450 WP_003230265.1 arginine repressor ArgR -
  GII87_RS13145 (GII87_13145) yqxC 2522455..2523300 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=399123 GII87_RS13125 WP_003226427.1 2517607..2518410(-) (spo0A) [Bacillus subtilis strain P8_B1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=399123 GII87_RS13125 WP_003226427.1 2517607..2518410(-) (spo0A) [Bacillus subtilis strain P8_B1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment