Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DEIPR_RS03475 Genome accession   NC_015161
Coordinates   701864..702517 (-) Length   217 a.a.
NCBI ID   WP_013614452.1    Uniprot ID   F0RLD9
Organism   Deinococcus proteolyticus MRP     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 696864..707517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPR_RS03445 (Deipr_0677) - 697298..698155 (-) 858 WP_013614446.1 DUF1028 domain-containing protein -
  DEIPR_RS03450 (Deipr_0678) glgC 698227..699477 (-) 1251 WP_013614447.1 glucose-1-phosphate adenylyltransferase -
  DEIPR_RS03455 (Deipr_0679) miaA 699639..700562 (-) 924 WP_013614448.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  DEIPR_RS03460 (Deipr_0680) - 700626..701072 (+) 447 WP_013614449.1 Hsp20/alpha crystallin family protein -
  DEIPR_RS03465 (Deipr_0681) - 701069..701296 (+) 228 WP_013614450.1 RNA-binding S4 domain-containing protein -
  DEIPR_RS03470 (Deipr_0682) - 701293..701859 (+) 567 WP_013614451.1 DUF1684 domain-containing protein -
  DEIPR_RS03475 (Deipr_0683) comF 701864..702517 (-) 654 WP_013614452.1 ComF family protein Machinery gene
  DEIPR_RS03480 (Deipr_0684) - 702541..702981 (+) 441 WP_013614453.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DEIPR_RS03485 (Deipr_0685) aroC 703053..704204 (-) 1152 WP_013614454.1 chorismate synthase -
  DEIPR_RS03490 (Deipr_0686) - 704291..706255 (-) 1965 WP_342626726.1 secretin N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23602.07 Da        Isoelectric Point: 10.1482

>NTDB_id=39912 DEIPR_RS03475 WP_013614452.1 701864..702517(-) (comF) [Deinococcus proteolyticus MRP]
MRNRLDLHGLAHWLRLALPRACPGCGGQLGQAAGLCWHCRAGLRPRVERHSPLSPFQEPHLVTLGRYQGPVRRAVRALKY
GQAREVAPVLGGLLASAVPDQWQVVGVVPVPLHPARERERGFNQAGLLAAAIADTLQVPYAPAALRRERRTQQQAKLSGE
ERRQNVAGAFAADASQLSEGAVLLVDDVLTTGHTLRACREALRAQGVEEFYYAVAAH

Nucleotide


Download         Length: 654 bp        

>NTDB_id=39912 DEIPR_RS03475 WP_013614452.1 701864..702517(-) (comF) [Deinococcus proteolyticus MRP]
ATGCGGAACAGACTGGACCTGCATGGCCTGGCGCACTGGCTGCGGCTGGCCCTCCCCCGCGCCTGCCCTGGCTGCGGAGG
ACAGCTGGGGCAGGCAGCCGGGCTGTGCTGGCACTGCCGCGCCGGACTGCGCCCGCGTGTCGAGCGGCACTCTCCCCTCT
CGCCTTTCCAGGAGCCGCATCTGGTCACGCTGGGACGCTACCAGGGGCCGGTGCGGCGAGCGGTGCGGGCGCTGAAATAC
GGGCAGGCACGGGAGGTCGCGCCGGTGCTGGGCGGGCTGCTGGCTTCGGCCGTGCCGGACCAGTGGCAGGTGGTGGGCGT
GGTGCCGGTGCCGCTGCACCCGGCCCGCGAGCGCGAACGGGGATTCAATCAGGCCGGCCTGCTGGCCGCCGCCATTGCCG
ACACCCTGCAAGTGCCCTACGCTCCCGCTGCCCTGCGGCGCGAACGCCGCACCCAGCAGCAAGCCAAGCTGAGCGGCGAG
GAGCGCCGGCAGAACGTGGCCGGGGCCTTTGCCGCCGACGCCTCGCAGCTTTCAGAAGGAGCTGTGTTGCTGGTGGACGA
CGTGCTGACCACCGGCCACACCCTACGGGCCTGCCGCGAGGCACTGCGGGCACAGGGTGTAGAGGAGTTCTATTACGCGG
TGGCCGCGCACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(127-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0RLD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.285

95.392

0.604

Multiple sequence alignment