Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPE48_RS00550 Genome accession   NZ_CP054368
Coordinates   114076..115503 (-) Length   475 a.a.
NCBI ID   WP_089589351.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-115     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 109076..120503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE48_RS00515 (HPE48_00515) hisL 109660..109710 (-) 51 WP_001364200.1 his operon leader peptide -
  HPE48_RS00520 (HPE48_00520) yefM 109993..110244 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HPE48_RS00525 (HPE48_00525) yoeB 110241..110495 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HPE48_RS00530 (HPE48_00530) yeeZ 110578..111402 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HPE48_RS00535 (HPE48_00535) yeeY 111448..112377 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  HPE48_RS00540 (HPE48_00540) yoeI 112592..112654 (+) 63 WP_010723108.1 membrane protein YoeI -
  HPE48_RS00545 (HPE48_00545) plaP 112644..114002 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  HPE48_RS00550 (HPE48_00550) sbcB 114076..115503 (-) 1428 WP_089589351.1 exodeoxyribonuclease I Machinery gene
  HPE48_RS00555 (HPE48_00555) dacD 115712..116878 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HPE48_RS00560 (HPE48_00560) sbmC 116997..117470 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  HPE48_RS00565 (HPE48_00565) yeeA 117668..118726 (+) 1059 WP_001200890.1 FUSC family protein -
  HPE48_RS00570 (HPE48_00570) tmaR 118897..119226 (+) 330 WP_000450409.1 DUF496 family protein -
  HPE48_RS00575 (HPE48_00575) - 119327..119509 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HPE48_RS00580 (HPE48_00580) - 119563..119709 (+) 147 Protein_116 transposase domain-containing protein -
  HPE48_RS00585 (HPE48_00585) - 119998..120078 (-) 81 Protein_117 hypothetical protein -
  HPE48_RS00590 (HPE48_00590) yeeW 120124..120318 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54469.76 Da        Isoelectric Point: 5.4700

>NTDB_id=399092 HPE48_RS00550 WP_089589351.1 114076..115503(-) (sbcB) [Escherichia coli strain SCU-115]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=399092 HPE48_RS00550 WP_089589351.1 114076..115503(-) (sbcB) [Escherichia coli strain SCU-115]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTATTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581