Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   DEIPR_RS01390 Genome accession   NC_015161
Coordinates   279539..281842 (+) Length   767 a.a.
NCBI ID   WP_245532707.1    Uniprot ID   -
Organism   Deinococcus proteolyticus MRP     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 274539..286842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPR_RS01355 (Deipr_0253) - 274887..275291 (+) 405 WP_013614035.1 hypothetical protein -
  DEIPR_RS01360 (Deipr_0254) - 275356..275886 (-) 531 WP_245532706.1 DUF3809 domain-containing protein -
  DEIPR_RS01365 (Deipr_0255) - 275906..276169 (-) 264 WP_013614037.1 DUF3248 domain-containing protein -
  DEIPR_RS01370 (Deipr_0256) purD 276166..277449 (-) 1284 WP_013614038.1 phosphoribosylamine--glycine ligase -
  DEIPR_RS01375 (Deipr_0257) - 277450..278364 (-) 915 WP_013614039.1 MBL fold metallo-hydrolase -
  DEIPR_RS14110 (Deipr_0258) - 278383..278556 (-) 174 WP_013614040.1 hypothetical protein -
  DEIPR_RS01380 (Deipr_0259) cdd 278590..279036 (-) 447 WP_013614041.1 cytidine deaminase -
  DEIPR_RS01385 (Deipr_0260) comEA 279151..279546 (+) 396 WP_013614042.1 helix-hairpin-helix domain-containing protein Machinery gene
  DEIPR_RS01390 (Deipr_0261) comEC 279539..281842 (+) 2304 WP_245532707.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DEIPR_RS01395 (Deipr_0262) - 281856..282872 (-) 1017 WP_013614044.1 M20/M25/M40 family metallo-hydrolase -
  DEIPR_RS01400 (Deipr_0263) mutY 283017..284048 (-) 1032 WP_041222205.1 A/G-specific adenine glycosylase -
  DEIPR_RS01405 (Deipr_0264) - 284160..285293 (-) 1134 WP_013614046.1 hypothetical protein -
  DEIPR_RS01410 (Deipr_0265) - 285442..285765 (+) 324 WP_013614047.1 hypothetical protein -

Sequence

Protein


Download         Length: 767 a.a.        Molecular weight: 80249.11 Da        Isoelectric Point: 10.2099

>NTDB_id=39909 DEIPR_RS01390 WP_245532707.1 279539..281842(+) (comEC) [Deinococcus proteolyticus MRP]
MSRPGPELNPEAGPVLGRAGAAVPAVPVPTPAAPRLGAPFFLLLGVLGALLPALGYGWGWALWPLALGLAAWERRPWGLA
AAALAGALAFGSLQTVQSRPDPLQPWLGAQVTLRGDWDGQFLTLRDPPARVALSPRPSERRGAVTVSGRLLPPRSRSVPG
GFDQAAWLRSQGGLFTLAPTAVLAGAQVQSSQPSGWAKGAVQGWFESGWQSLSPRAEALLRGAELGDRSDLNELQLDSGV
TVRDAFQRSGLTHLLALSGQHVTLLVGALTLLLTRLPLPAWARYAGPALFLLAYLGMVVNTSPSVVRAGLTGLLGLTALW
LGRGRLDPPSLVALVAAGLLVAYPLWLVTPGFQLSFLAVGGLLLLPRVLARLPAAWTRPGPPLWLTGSLAVTLLAQAATL
PLVAGSFGGVPLSSLPANLLAGPLMALLIPLGFLAGVLGPLGAVLKWPLEALSAALLWLAETFGRWPLLPWGAVGPAGYL
AYGLAALAGGLWLLGRIRPPAALATALACILLTALPPRLSPPRQLVFLDVGQGDSTLIQTPELRVLVDGGGTPRGDYDLS
RTTVPALHSLGVHALDVVVATHSDSDHIEGLAGVLRAMPVGELWIGHHDPDSSSLADLLAVAEQRGVPVREVRRGDVAQA
GRLRLDVLWPQGRVWSTEPNENSVALRLTASGGEGQSFRAALLGDLPAPLEHSLGLGQVDLLKAPHHGSRHSTSAELLQE
TGAPHAVVSVGFNTFGHPSREVQERLKAAGVRTWRTDTQGTVVWPLP

Nucleotide


Download         Length: 2304 bp        

>NTDB_id=39909 DEIPR_RS01390 WP_245532707.1 279539..281842(+) (comEC) [Deinococcus proteolyticus MRP]
TTGAGTAGGCCGGGGCCAGAGTTGAACCCGGAGGCGGGGCCGGTGCTGGGACGGGCGGGTGCCGCCGTTCCCGCTGTCCC
GGTCCCGACTCCCGCCGCCCCCCGGCTGGGCGCTCCCTTTTTCCTGCTGCTGGGCGTGCTGGGTGCCCTGCTCCCCGCCC
TGGGGTACGGCTGGGGCTGGGCGCTGTGGCCGCTGGCGCTGGGACTGGCCGCCTGGGAACGGCGGCCCTGGGGGCTGGCG
GCAGCGGCGCTGGCAGGAGCGCTGGCGTTCGGGTCATTGCAGACAGTGCAGTCGCGGCCTGACCCCTTGCAGCCCTGGCT
GGGCGCTCAGGTCACACTGCGCGGCGACTGGGACGGGCAATTCCTGACCCTGCGTGACCCGCCCGCCCGCGTGGCCCTCT
CGCCCCGGCCTTCCGAGCGGCGCGGGGCAGTCACGGTGTCGGGCCGCCTGCTGCCGCCCCGCTCCCGCAGCGTGCCGGGT
GGCTTCGATCAGGCGGCCTGGCTGCGCTCGCAGGGCGGGCTGTTTACCCTGGCCCCCACGGCCGTGCTGGCCGGTGCTCA
GGTGCAATCGTCGCAGCCGTCCGGCTGGGCCAAGGGCGCGGTGCAGGGCTGGTTCGAGAGCGGCTGGCAGAGCCTCAGCC
CCCGCGCCGAGGCGTTGCTGCGCGGCGCGGAACTGGGCGACCGCTCCGACCTGAACGAACTGCAGCTGGACAGTGGCGTC
ACTGTGCGCGACGCTTTTCAGCGTTCCGGCCTCACGCACCTGCTGGCGCTCAGCGGGCAGCACGTCACGCTGCTGGTGGG
CGCCCTCACGCTGCTGCTGACCCGCTTGCCGCTGCCGGCCTGGGCACGCTACGCGGGACCGGCGCTGTTCCTGCTCGCCT
ATCTGGGCATGGTGGTCAACACTTCGCCCAGCGTGGTGCGTGCGGGCCTGACCGGGCTGCTGGGCCTGACCGCGCTGTGG
CTGGGGCGTGGGCGGCTGGACCCGCCGTCACTGGTGGCGCTGGTGGCCGCCGGGCTGCTGGTGGCCTATCCGCTGTGGCT
GGTCACACCGGGGTTTCAGCTGTCGTTTCTGGCGGTGGGCGGCTTGCTGCTGCTGCCCCGCGTGCTGGCCCGCCTGCCTG
CCGCCTGGACCCGTCCCGGCCCGCCGCTGTGGCTGACCGGCAGCCTGGCCGTGACCCTGCTGGCTCAGGCGGCCACCCTG
CCGCTGGTGGCCGGGTCGTTCGGTGGGGTGCCGCTCTCGTCGCTGCCCGCCAACCTGCTGGCCGGGCCGCTGATGGCGCT
GCTGATTCCGCTGGGCTTTCTGGCCGGGGTGCTGGGGCCGCTGGGGGCAGTGCTGAAGTGGCCGCTGGAGGCCCTGAGCG
CGGCGCTGCTGTGGCTGGCCGAAACCTTCGGGCGCTGGCCGCTGCTGCCCTGGGGCGCGGTGGGGCCGGCGGGGTATCTG
GCCTACGGGCTGGCGGCGCTGGCGGGCGGCCTGTGGCTCCTGGGCCGGATACGGCCTCCGGCGGCGCTTGCCACCGCGCT
GGCCTGCATCCTGCTCACGGCGCTGCCGCCCCGGCTCAGTCCGCCCCGGCAGCTGGTGTTTCTGGACGTAGGTCAGGGCG
ACTCTACCCTTATCCAGACCCCCGAACTGCGCGTGCTGGTGGACGGCGGGGGCACGCCACGCGGTGACTACGACCTCAGC
CGCACCACGGTGCCTGCGCTGCACTCGCTGGGCGTTCATGCGCTGGACGTGGTGGTGGCGACCCACTCGGACTCGGACCA
TATCGAGGGGCTGGCCGGCGTGCTGCGGGCCATGCCGGTAGGCGAACTGTGGATCGGCCACCACGACCCTGACAGCAGTT
CTCTGGCCGACCTGCTGGCCGTGGCCGAGCAGCGCGGCGTACCTGTGCGCGAGGTGCGGCGCGGCGACGTGGCCCAGGCG
GGCCGGCTGCGGCTGGATGTGCTGTGGCCGCAGGGGCGCGTGTGGAGCACCGAACCCAACGAAAACAGCGTGGCCCTGCG
CCTGACCGCCAGCGGAGGGGAAGGGCAGAGCTTCCGCGCCGCGCTGCTGGGCGACCTGCCCGCCCCGCTGGAACACAGCC
TGGGGTTGGGGCAGGTGGACCTGCTCAAGGCCCCACACCACGGCAGCCGCCACAGCACTTCGGCGGAGTTGCTACAGGAA
ACGGGCGCACCCCACGCGGTGGTCAGCGTGGGCTTCAACACCTTCGGGCACCCCAGCCGCGAAGTGCAGGAGCGCCTGAA
GGCCGCTGGGGTACGGACGTGGCGCACCGACACCCAGGGCACGGTGGTCTGGCCCCTACCGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(529-611)

Competence protein (Competence)

(241-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.015

88.396

0.486

Multiple sequence alignment