Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPE49_RS07140 Genome accession   NZ_CP054363
Coordinates   1473077..1473592 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain SCU-171     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1468077..1478592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE49_RS07120 (HPE49_07115) emrA 1468225..1469397 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HPE49_RS07125 (HPE49_07120) emrB 1469414..1470952 (+) 1539 WP_042102192.1 multidrug efflux MFS transporter permease subunit EmrB -
  HPE49_RS07130 (HPE49_07125) - 1471210..1471917 (+) 708 WP_001561911.1 RNA ligase family protein -
  HPE49_RS07135 (HPE49_07130) - 1471914..1473026 (+) 1113 WP_001561912.1 ATP-binding protein -
  HPE49_RS07140 (HPE49_07135) luxS 1473077..1473592 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HPE49_RS07145 (HPE49_07140) gshA 1473742..1475298 (-) 1557 WP_042105369.1 glutamate--cysteine ligase -
  HPE49_RS07150 (HPE49_07145) yqaA 1475371..1475799 (-) 429 WP_001287462.1 YqaA family protein -
  HPE49_RS07155 (HPE49_07150) yqaB 1475796..1476362 (-) 567 WP_000273325.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HPE49_RS07185 (HPE49_07180) csrA 1477685..1477870 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=399027 HPE49_RS07140 WP_001130211.1 1473077..1473592(-) (luxS) [Escherichia coli strain SCU-171]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=399027 HPE49_RS07140 WP_001130211.1 1473077..1473592(-) (luxS) [Escherichia coli strain SCU-171]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731