Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPE49_RS03950 Genome accession   NZ_CP054363
Coordinates   784318..785745 (+) Length   475 a.a.
NCBI ID   WP_072656679.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-171     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 779318..790745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE49_RS03910 (HPE49_03900) yeeW 779502..779696 (+) 195 WP_000988600.1 DUF5983 family protein -
  HPE49_RS03915 (HPE49_03905) - 779742..779822 (+) 81 Protein_786 hypothetical protein -
  HPE49_RS03920 (HPE49_03910) - 780111..780239 (-) 129 Protein_787 transposase domain-containing protein -
  HPE49_RS03925 (HPE49_03915) - 780311..780493 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HPE49_RS03930 (HPE49_03920) tmaR 780594..780923 (-) 330 WP_000450409.1 DUF496 family protein -
  HPE49_RS03935 (HPE49_03925) yeeA 781095..782153 (-) 1059 WP_001200891.1 FUSC family protein -
  HPE49_RS03940 (HPE49_03930) sbmC 782351..782824 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  HPE49_RS03945 (HPE49_03935) dacD 782943..784109 (-) 1167 WP_042105928.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HPE49_RS03950 (HPE49_03940) sbcB 784318..785745 (+) 1428 WP_072656679.1 exodeoxyribonuclease I Machinery gene
  HPE49_RS03955 (HPE49_03945) tsuB 785788..786015 (-) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HPE49_RS03960 (HPE49_03950) tsuA 786029..787087 (-) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  HPE49_RS03965 (HPE49_03955) plaP 787266..788624 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HPE49_RS03970 (HPE49_03960) yoeI 788614..788676 (-) 63 WP_010723108.1 membrane protein YoeI -
  HPE49_RS03975 (HPE49_03965) yeeY 788891..789820 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  HPE49_RS03980 (HPE49_03970) yeeZ 789866..790690 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54488.76 Da        Isoelectric Point: 5.4720

>NTDB_id=399017 HPE49_RS03950 WP_072656679.1 784318..785745(+) (sbcB) [Escherichia coli strain SCU-171]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARSKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=399017 HPE49_RS03950 WP_072656679.1 784318..785745(+) (sbcB) [Escherichia coli strain SCU-171]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGTCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583