Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GI584_RS12910 Genome accession   NZ_CP045915
Coordinates   2731199..2732914 (-) Length   571 a.a.
NCBI ID   WP_153791476.1    Uniprot ID   A0A5Q2TL55
Organism   Gracilibacillus salitolerans strain SCU50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2726199..2737914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GI584_RS12885 (GI584_12885) - 2726222..2726821 (-) 600 WP_153791473.1 CAP domain-containing protein -
  GI584_RS12890 (GI584_12890) - 2726950..2728062 (+) 1113 WP_153791474.1 mechanosensitive ion channel family protein -
  GI584_RS12895 (GI584_12895) - 2728093..2728233 (-) 141 WP_153791475.1 hypothetical protein -
  GI584_RS12900 (GI584_12900) spo0A 2728678..2729460 (-) 783 WP_100360276.1 sporulation transcription factor Spo0A -
  GI584_RS12905 (GI584_12905) spoIVB 2729777..2731063 (-) 1287 WP_100360275.1 SpoIVB peptidase -
  GI584_RS12910 (GI584_12910) recN 2731199..2732914 (-) 1716 WP_153791476.1 DNA repair protein RecN Machinery gene
  GI584_RS12915 (GI584_12915) ahrC 2732928..2733377 (-) 450 WP_100360273.1 transcriptional regulator AhrC/ArgR -
  GI584_RS12920 (GI584_12920) - 2733441..2734262 (-) 822 WP_100360272.1 TlyA family RNA methyltransferase -
  GI584_RS12925 (GI584_12925) dxs 2734269..2736167 (-) 1899 WP_153791477.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GI584_RS12930 (GI584_12930) - 2736203..2736781 (-) 579 WP_100360270.1 hypothetical protein -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 65522.20 Da        Isoelectric Point: 5.5356

>NTDB_id=399013 GI584_RS12910 WP_153791476.1 2731199..2732914(-) (recN) [Gracilibacillus salitolerans strain SCU50]
MLTELSIKNFAIIDELHIPFQNGLTVLTGETGAGKSIIIDAVGLLIGGRGSVEYVRHGEKKAELEGLFIIDDTEHPVYQK
ARELGIEIMEDHMLVLHRTISHSGKSICRINGKLITLAILKEIGQSVLDIHSQHETQALLNQDKHMELLDYFYQSKHAHF
KKHYQKLYQQWKELKYKYEANNKNEQELAQRMDLLEFQLNEIQNANLQPNEDEALTDERNELHHFETIHKNLNDAYNALH
GEQKGLDWLSHAANNLEEAGEHNKEIQTLHQQYVDHYYLIEEISYQIRQHLDQMDYQPGRLELIESRLHEIDQLKRKYGQ
NVEEIMTYSAKIEEELDEIKNRDQHLANLAEMVQEAANDLLLEAKELHNNRKKAAKQLEKAVLTELKDLYLDKTDFQVDV
FIPNKEKGIPFEGKKVTPHEDGMDQVKFLISTNPGEPVKELDRIASGGEMSRIMLALKNIFSKHQGVTSVIFDEVDTGVS
GRVAQSMADKIYNISIGSQVLCITHLPQVASIADTQLKIEKVITGNRTHTTIQELSFEERIDEIGKMITGAELTDTSRTH
AKELIEMNHKK

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=399013 GI584_RS12910 WP_153791476.1 2731199..2732914(-) (recN) [Gracilibacillus salitolerans strain SCU50]
ATGTTAACCGAATTATCCATTAAAAATTTTGCTATTATTGATGAACTTCATATTCCATTTCAAAATGGCCTAACGGTATT
AACTGGTGAAACAGGTGCAGGTAAATCAATCATCATCGATGCGGTGGGTCTATTGATTGGTGGAAGAGGATCGGTTGAAT
ATGTTCGACACGGCGAAAAAAAGGCAGAATTAGAAGGTTTGTTTATCATTGATGATACTGAGCACCCTGTTTATCAAAAG
GCAAGGGAATTAGGAATTGAAATAATGGAGGATCATATGCTTGTTCTCCACCGAACAATTTCCCATTCAGGAAAAAGTAT
TTGCCGTATTAACGGGAAGTTGATTACTTTAGCTATATTGAAGGAAATTGGACAATCTGTCTTAGATATACATAGCCAAC
ACGAAACACAAGCATTATTGAATCAGGATAAACATATGGAGTTGTTGGATTATTTTTATCAGTCCAAGCATGCCCATTTT
AAGAAGCACTATCAAAAGTTATATCAGCAGTGGAAAGAACTTAAATATAAATATGAAGCCAACAATAAAAATGAACAGGA
ATTGGCTCAACGCATGGATTTGTTGGAATTTCAATTAAATGAAATTCAAAATGCTAACTTACAACCGAATGAAGATGAAG
CTCTAACTGATGAACGTAATGAATTGCATCATTTTGAAACGATCCATAAAAACTTAAACGATGCCTATAACGCGTTGCAT
GGTGAACAAAAAGGTTTAGATTGGTTATCGCATGCTGCTAATAACCTTGAAGAGGCGGGAGAACATAATAAAGAAATTCA
AACATTGCATCAACAATATGTTGACCATTATTACTTAATTGAAGAAATATCTTATCAAATTAGACAACACCTTGATCAAA
TGGATTATCAACCAGGACGGTTAGAATTAATTGAGTCAAGGTTGCATGAAATTGATCAATTGAAAAGAAAATATGGTCAG
AATGTTGAAGAAATCATGACATATAGTGCTAAAATTGAAGAAGAGTTGGACGAAATAAAAAATCGAGATCAACATCTTGC
AAATTTGGCAGAAATGGTACAGGAAGCAGCAAATGATTTATTGTTAGAAGCAAAAGAATTACACAACAATAGAAAAAAAG
CTGCTAAACAACTAGAAAAAGCAGTTTTGACGGAACTAAAGGATCTTTATTTAGATAAAACAGATTTTCAAGTCGATGTA
TTCATTCCTAATAAAGAAAAAGGCATACCTTTTGAAGGGAAAAAAGTAACACCACATGAAGATGGGATGGATCAAGTGAA
ATTTTTAATTTCAACAAATCCCGGGGAACCCGTAAAAGAACTAGATCGGATTGCTTCAGGTGGTGAAATGTCAAGGATCA
TGCTAGCACTAAAAAATATTTTTTCAAAGCATCAAGGAGTTACAAGTGTTATATTTGATGAAGTAGATACAGGAGTTAGT
GGACGAGTAGCGCAGTCAATGGCTGATAAAATTTATAATATTTCAATCGGATCACAAGTCCTTTGTATTACACATTTACC
TCAGGTAGCTTCCATTGCTGATACACAATTAAAAATTGAAAAAGTTATAACAGGAAACAGGACACATACAACGATCCAAG
AATTATCTTTTGAGGAACGAATTGATGAAATTGGAAAGATGATTACAGGTGCTGAATTAACAGATACATCTAGAACGCAT
GCAAAAGAATTAATTGAAATGAATCATAAAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q2TL55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.373

99.65

0.522

Multiple sequence alignment