Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SPNOXC_RS02620 Genome accession   NC_017592
Coordinates   486620..487351 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae OXC141     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 481620..492351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPNOXC_RS02590 (SPNOXC04770) dnaK 481637..483460 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  SPNOXC_RS02595 (SPNOXC04780) - 483473..483826 (+) 354 WP_000115730.1 hypothetical protein -
  SPNOXC_RS02600 (SPNOXC04790) dnaJ 484031..485167 (+) 1137 WP_001066293.1 molecular chaperone DnaJ -
  SPNOXC_RS12155 - 485489..485683 (-) 195 WP_001808905.1 hypothetical protein -
  SPNOXC_RS02610 (SPNOXC04810) - 485845..486132 (-) 288 WP_000777760.1 hypothetical protein -
  SPNOXC_RS02615 (SPNOXC04820) - 486142..486552 (-) 411 WP_001278301.1 HIT family protein -
  SPNOXC_RS02620 (SPNOXC04830) pptA 486620..487351 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  SPNOXC_RS02625 (SPNOXC04840) pptB 487348..488397 (+) 1050 WP_000653752.1 ABC transporter permease Regulator
  SPNOXC_RS02630 (SPNOXC04850) - 488565..488894 (-) 330 WP_000132570.1 hypothetical protein -
  SPNOXC_RS02635 (SPNOXC04860) - 489170..489508 (+) 339 WP_000682119.1 LytTR family DNA-binding domain-containing protein -
  SPNOXC_RS02640 (SPNOXC04870) comE/blpR 489513..490250 (+) 738 WP_001219127.1 response regulator transcription factor Regulator
  SPNOXC_RS02645 (SPNOXC04880) - 490264..491604 (+) 1341 WP_001017622.1 sensor histidine kinase -
  SPNOXC_RS02650 (SPNOXC04890) blpC 491646..491801 (-) 156 WP_000358813.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=39901 SPNOXC_RS02620 WP_000889923.1 486620..487351(+) (pptA) [Streptococcus pneumoniae OXC141]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=39901 SPNOXC_RS02620 WP_000889923.1 486620..487351(+) (pptA) [Streptococcus pneumoniae OXC141]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708