Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPE50_RS19220 Genome accession   NZ_CP054353
Coordinates   3899824..3900339 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain SCU-172     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3894824..3905339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE50_RS19175 (HPE50_19175) csrA 3895705..3895890 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HPE50_RS19205 (HPE50_19205) yqaB 3897054..3897620 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HPE50_RS19210 (HPE50_19210) yqaA 3897617..3898045 (+) 429 WP_001287454.1 YqaA family protein -
  HPE50_RS19215 (HPE50_19215) gshA 3898118..3899674 (+) 1557 WP_000611781.1 glutamate--cysteine ligase -
  HPE50_RS19220 (HPE50_19220) luxS 3899824..3900339 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  HPE50_RS19225 (HPE50_19225) emrB 3900403..3901941 (-) 1539 WP_001571798.1 multidrug efflux MFS transporter permease subunit EmrB -
  HPE50_RS19230 (HPE50_19230) emrA 3901958..3903130 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HPE50_RS19235 (HPE50_19235) emrR 3903257..3903787 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HPE50_RS19240 (HPE50_19245) ygaH 3903878..3904213 (-) 336 WP_000119760.1 L-valine transporter subunit YgaH -
  HPE50_RS19245 (HPE50_19250) ygaZ 3904203..3904940 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=398986 HPE50_RS19220 WP_001130208.1 3899824..3900339(+) (luxS) [Escherichia coli strain SCU-172]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=398986 HPE50_RS19220 WP_001130208.1 3899824..3900339(+) (luxS) [Escherichia coli strain SCU-172]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737