Detailed information NTG0398983

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPE50_RS18915
• Genome accession: NZ_CP054353
• Coordinates: 3843301..3844293 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-172
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3838301..3849293

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPE50_RS18885 (HPE50_18885)	ispD	3838362..3839072 (+)	711	WP_000246132.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPE50_RS18890 (HPE50_18890)	ispF	3839072..3839551 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPE50_RS18895 (HPE50_18895)	truD	3839548..3840597 (+)	1050	WP_016234840.1	tRNA pseudouridine(13) synthase TruD	-
HPE50_RS18900 (HPE50_18900)	surE	3840578..3841339 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HPE50_RS18905 (HPE50_18905)	pcm	3841333..3841959 (+)	627	WP_001571789.1	protein-L-isoaspartate O-methyltransferase	-
HPE50_RS18910 (HPE50_18910)	nlpD	3842144..3843238 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HPE50_RS18915 (HPE50_18915)	rpoS	3843301..3844293 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HPE50_RS18920 (HPE50_18920)	-	3844414..3844821 (-)	408	WP_001208067.1	MarR family transcriptional regulator	-
HPE50_RS18925 (HPE50_18925)	-	3844968..3845561 (+)	594	WP_000767731.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
HPE50_RS18930 (HPE50_18930)	-	3845561..3846988 (+)	1428	WP_016235825.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
HPE50_RS18935 (HPE50_18935)	-	3846999..3847235 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
HPE50_RS18940 (HPE50_18940)	ygbN	3847274..3848638 (-)	1365	WP_000104457.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=398983 HPE50_RS18915 WP_000081550.1 3843301..3844293(+) (rpoS) [Escherichia coli strain SCU-172]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=398983 HPE50_RS18915 WP_000081550.1 3843301..3844293(+) (rpoS) [Escherichia coli strain SCU-172]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715