Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPE50_RS09295 Genome accession   NZ_CP054353
Coordinates   1924206..1925633 (-) Length   475 a.a.
NCBI ID   WP_000980614.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-172     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1919206..1930633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE50_RS09265 (HPE50_09260) yeeZ 1919261..1920085 (+) 825 WP_000754740.1 SDR family oxidoreductase -
  HPE50_RS09270 (HPE50_09265) yeeY 1920131..1921060 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  HPE50_RS09275 (HPE50_09270) yoeI 1921275..1921337 (+) 63 WP_010723108.1 membrane protein YoeI -
  HPE50_RS09280 (HPE50_09275) plaP 1921327..1922685 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HPE50_RS09285 (HPE50_09280) tsuA 1922864..1923922 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  HPE50_RS09290 (HPE50_09285) tsuB 1923936..1924163 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HPE50_RS09295 (HPE50_09290) sbcB 1924206..1925633 (-) 1428 WP_000980614.1 exodeoxyribonuclease I Machinery gene
  HPE50_RS09300 (HPE50_09295) dacD 1925842..1927008 (+) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HPE50_RS09305 (HPE50_09300) - 1927206..1927724 (+) 519 WP_000115885.1 ClbS/DfsB family four-helix bundle protein -
  HPE50_RS09310 (HPE50_09305) - 1927743..1928963 (+) 1221 WP_000343765.1 ISL3-like element ISEc53 family transposase -
  HPE50_RS09315 (HPE50_09310) sbmC 1929020..1929493 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.74 Da        Isoelectric Point: 5.6054

>NTDB_id=398959 HPE50_RS09295 WP_000980614.1 1924206..1925633(-) (sbcB) [Escherichia coli strain SCU-172]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTARADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=398959 HPE50_RS09295 WP_000980614.1 1924206..1925633(-) (sbcB) [Escherichia coli strain SCU-172]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAGAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581