Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HPE50_RS06200 Genome accession   NZ_CP054353
Coordinates   1289472..1290077 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SCU-172     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1284472..1295077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE50_RS06170 (HPE50_06165) rsmS 1285177..1285338 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HPE50_RS06175 (HPE50_06170) priC 1285352..1285879 (-) 528 WP_000844855.1 primosomal replication protein N'' -
  HPE50_RS06180 (HPE50_06175) ybaN 1285949..1286326 (+) 378 WP_001188905.1 DUF454 family protein -
  HPE50_RS06185 (HPE50_06180) apt 1286479..1287030 (+) 552 WP_001329649.1 adenine phosphoribosyltransferase -
  HPE50_RS06190 (HPE50_06185) dnaX 1287159..1289090 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  HPE50_RS06195 (HPE50_06190) ybaB 1289143..1289472 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HPE50_RS06200 (HPE50_06195) recR 1289472..1290077 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HPE50_RS06205 (HPE50_06200) htpG 1290187..1292061 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  HPE50_RS06210 (HPE50_06205) adk 1292242..1292886 (+) 645 WP_001220233.1 adenylate kinase -
  HPE50_RS06215 (HPE50_06210) hemH 1293018..1293980 (+) 963 WP_001250114.1 ferrochelatase -
  HPE50_RS06220 (HPE50_06215) aes 1293977..1294936 (-) 960 WP_000801814.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=398953 HPE50_RS06200 WP_001195025.1 1289472..1290077(+) (recR) [Escherichia coli strain SCU-172]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=398953 HPE50_RS06200 WP_001195025.1 1289472..1290077(+) (recR) [Escherichia coli strain SCU-172]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443