Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FTV88_RS14345 Genome accession   NZ_CP045875
Coordinates   2994193..2995566 (-) Length   457 a.a.
NCBI ID   WP_153726241.1    Uniprot ID   A0A5Q2N328
Organism   Heliorestis convoluta strain HH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2989193..3000566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTV88_RS14315 (FTV88_3136) - 2989698..2990855 (-) 1158 WP_243137539.1 PIN/TRAM domain-containing protein -
  FTV88_RS14320 (FTV88_3137) - 2990983..2991459 (-) 477 WP_153726238.1 CarD family transcriptional regulator -
  FTV88_RS14325 (FTV88_3138) - 2991649..2992044 (+) 396 WP_153726239.1 DUF1573 domain-containing protein -
  FTV88_RS15695 (FTV88_3139) - 2992185..2992655 (+) 471 WP_207707884.1 hypothetical protein -
  FTV88_RS14335 (FTV88_3140) - 2992668..2993123 (+) 456 WP_153726240.1 spore coat protein -
  FTV88_RS14340 (FTV88_3141) disA 2993124..2994209 (-) 1086 WP_368277385.1 DNA integrity scanning diadenylate cyclase DisA -
  FTV88_RS14345 (FTV88_3142) radA 2994193..2995566 (-) 1374 WP_153726241.1 DNA repair protein RadA Machinery gene
  FTV88_RS14350 (FTV88_3143) - 2995707..2998151 (-) 2445 WP_153726242.1 ATP-dependent Clp protease ATP-binding subunit -
  FTV88_RS14355 (FTV88_3144) - 2998176..2999246 (-) 1071 WP_153726243.1 protein arginine kinase -
  FTV88_RS14360 (FTV88_3145) - 2999262..2999786 (-) 525 WP_153726244.1 UvrB/UvrC motif-containing protein -
  FTV88_RS14365 (FTV88_3146) - 2999789..3000298 (-) 510 WP_153726245.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49403.86 Da        Isoelectric Point: 6.9351

>NTDB_id=398940 FTV88_RS14345 WP_153726241.1 2994193..2995566(-) (radA) [Heliorestis convoluta strain HH]
MAKGKSRFFCNQCGQESLKWMGRCNGCGAWNSLVEEKVAKNESASSLTSRFGTQGISKPIHIDEAVDGDESRFSTGIQEL
DRVLGGGLVNGSLTLLSGDPGIGKSTILLQSAAQVANRSKVLYVSGEESVQQIKMRAQRLQVKNVNLYLLAETNIETILE
IIKNIEPQWVIIDSIQTLYWNEIGSAPGNVAQVRECSGQLLRLAKDLPVAITLVGHVTKEGAIAGPRVLEHMVDTVLYLE
GERNYPYRILRSVKNRFGSTNELGVFEMLGQGMVEVSNPSAFFLAERSQGAPGSVVVPSMEGTRPLLVEVQALVTPTLFG
PARRVATGLDYQRTVLLAAVLDKKIGLHLGQQDIYVNVAGGLKIVEPAVDLAIVAAIASSSRNQMTDPETVLIGEVGLTG
EVRAVGHLEKRIREASKLGFRRCICPGQNRKYLKGDVEIEIIGVEKVEEALSVALGG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=398940 FTV88_RS14345 WP_153726241.1 2994193..2995566(-) (radA) [Heliorestis convoluta strain HH]
GTGGCTAAAGGAAAAAGCCGTTTTTTTTGTAATCAATGTGGACAAGAGTCGCTGAAATGGATGGGCCGCTGTAATGGATG
CGGCGCTTGGAACAGTCTAGTTGAAGAAAAAGTTGCTAAAAATGAAAGCGCTTCCTCGCTAACAAGTCGTTTCGGCACGC
AAGGTATCTCCAAGCCCATTCATATTGATGAAGCGGTCGATGGTGATGAATCAAGATTTTCAACAGGGATTCAAGAACTC
GATCGCGTCTTAGGAGGTGGTCTCGTCAACGGTTCGCTAACCCTTTTATCGGGCGATCCGGGTATCGGAAAATCGACCAT
ACTTCTTCAAAGTGCCGCTCAGGTAGCCAATCGAAGCAAAGTTCTCTATGTTTCTGGTGAGGAATCGGTGCAACAGATCA
AAATGAGGGCGCAGCGCCTTCAAGTGAAGAATGTAAATCTCTATTTGTTGGCTGAAACGAATATAGAAACAATTCTAGAA
ATAATTAAGAACATAGAACCGCAATGGGTCATTATTGATTCCATTCAAACATTATACTGGAATGAAATCGGATCAGCGCC
AGGGAATGTAGCACAAGTGAGGGAATGCTCCGGACAGCTACTGCGTTTGGCAAAAGATTTACCCGTAGCCATTACGCTAG
TCGGTCATGTTACCAAAGAAGGTGCCATCGCTGGGCCAAGGGTTCTTGAGCACATGGTAGATACAGTGTTGTACCTTGAG
GGAGAAAGAAACTATCCTTATCGCATTTTACGAAGTGTAAAAAATCGATTTGGGTCCACCAATGAACTAGGCGTCTTTGA
AATGTTAGGTCAGGGTATGGTGGAAGTTTCCAATCCATCTGCTTTTTTTCTGGCCGAAAGAAGTCAAGGGGCACCTGGTT
CTGTCGTTGTACCTTCAATGGAAGGCACAAGGCCTCTCTTGGTTGAAGTGCAAGCCCTTGTTACACCGACCCTATTTGGG
CCTGCTCGTCGCGTTGCTACAGGATTAGACTACCAGAGAACGGTATTGTTAGCGGCTGTTTTAGACAAAAAAATCGGTCT
TCATCTGGGGCAACAAGACATTTATGTAAATGTGGCTGGTGGACTCAAAATTGTCGAACCAGCCGTTGATCTGGCCATCG
TAGCAGCCATTGCTTCGAGCAGTCGCAACCAAATGACAGATCCAGAAACGGTCTTAATCGGTGAAGTTGGCTTAACGGGT
GAAGTACGTGCAGTCGGTCACCTAGAAAAAAGAATTCGAGAAGCCTCCAAACTAGGCTTCCGTCGTTGTATTTGCCCTGG
CCAAAATAGGAAATACTTGAAAGGAGACGTAGAGATTGAAATTATCGGGGTAGAAAAAGTAGAAGAAGCCCTGTCAGTTG
CATTGGGAGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)

AAA domain (AAA_25)

(68-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q2N328

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.895

100

0.56
  radA Streptococcus mitis SK321

52.423

99.344

0.521
  radA Streptococcus mitis NCTC 12261

52.423

99.344

0.521
  radA Streptococcus pneumoniae Rx1

52.423

99.344

0.521
  radA Streptococcus pneumoniae D39

52.423

99.344

0.521
  radA Streptococcus pneumoniae R6

52.423

99.344

0.521
  radA Streptococcus pneumoniae TIGR4

52.423

99.344

0.521

Multiple sequence alignment