Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GIY00_RS03980 Genome accession   NZ_CP045870
Coordinates   780510..781133 (-) Length   207 a.a.
NCBI ID   WP_026612357.1    Uniprot ID   A0AAW9LN46
Organism   Klebsiella aerogenes strain Y1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 775510..786133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIY00_RS03965 (GIY00_03965) helD 775745..777799 (-) 2055 WP_015367425.1 DNA helicase IV -
  GIY00_RS03970 (GIY00_03970) - 777923..778369 (+) 447 WP_015367426.1 YccF domain-containing protein -
  GIY00_RS03975 (GIY00_03975) yccS 778387..780522 (+) 2136 WP_155961154.1 YccS family putative transporter -
  GIY00_RS03980 (GIY00_03980) sxy/tfoX 780510..781133 (-) 624 WP_026612357.1 TfoX/Sxy family DNA transformation protein Regulator
  GIY00_RS03985 (GIY00_03985) sulA 781583..782092 (+) 510 WP_020079240.1 SOS-induced cell division inhibitor SulA -
  GIY00_RS03990 (GIY00_03990) ompA 782445..783497 (+) 1053 WP_080473199.1 porin OmpA -
  GIY00_RS03995 (GIY00_03995) matP 783589..784041 (-) 453 WP_015367432.1 macrodomain Ter protein MatP -
  GIY00_RS04000 (GIY00_04000) - 784227..785984 (+) 1758 WP_032705615.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23612.33 Da        Isoelectric Point: 10.0181

>NTDB_id=398887 GIY00_RS03980 WP_026612357.1 780510..781133(-) (sxy/tfoX) [Klebsiella aerogenes strain Y1]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSEKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=398887 GIY00_RS03980 WP_026612357.1 780510..781133(-) (sxy/tfoX) [Klebsiella aerogenes strain Y1]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTCGGCGGGTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAGGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGCGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTGATGATGCGCAAGAATGGCCGGCCAGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTATGGCAGGACAGTAAAATGCTGTTTCACCTATCGCAGCTGTCATTGCATTCGGCGCG
AAGCGAAAAGCAGCATCAGCGTGATTCCGGCAGACTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACACAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.777

95.169

0.493

Multiple sequence alignment