Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HPE52_RS15245 Genome accession   NZ_CP054345
Coordinates   3153560..3154165 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SCU-176     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3148560..3159165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE52_RS15225 (HPE52_15225) aes 3148714..3149682 (+) 969 WP_000801820.1 acetyl esterase -
  HPE52_RS15230 (HPE52_15230) hemH 3149657..3150619 (-) 963 WP_001250114.1 ferrochelatase -
  HPE52_RS15235 (HPE52_15235) adk 3150751..3151395 (-) 645 WP_001313630.1 adenylate kinase -
  HPE52_RS15240 (HPE52_15240) htpG 3151576..3153450 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  HPE52_RS15245 (HPE52_15245) recR 3153560..3154165 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HPE52_RS15250 (HPE52_15250) ybaB 3154165..3154494 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HPE52_RS15255 (HPE52_15255) dnaX 3154547..3156478 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  HPE52_RS15260 (HPE52_15260) apt 3156607..3157158 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HPE52_RS15265 (HPE52_15265) ybaN 3157311..3157688 (-) 378 WP_001188900.1 DUF454 family protein -
  HPE52_RS15270 (HPE52_15270) priC 3157758..3158285 (+) 528 WP_000844854.1 primosomal replication protein N'' -
  HPE52_RS15275 (HPE52_15275) rsmS 3158299..3158460 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HPE52_RS25030 - 3158513..3158611 (-) 99 Protein_3030 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=398882 HPE52_RS15245 WP_001195025.1 3153560..3154165(-) (recR) [Escherichia coli strain SCU-176]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=398882 HPE52_RS15245 WP_001195025.1 3153560..3154165(-) (recR) [Escherichia coli strain SCU-176]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443