Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPE52_RS06980 Genome accession   NZ_CP054345
Coordinates   1502932..1504359 (-) Length   475 a.a.
NCBI ID   WP_001538915.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-176     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1497932..1509359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE52_RS06945 (HPE52_06950) hisL 1498516..1498566 (-) 51 WP_001364200.1 his operon leader peptide -
  HPE52_RS06950 (HPE52_06955) yefM 1498849..1499100 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HPE52_RS06955 (HPE52_06960) yoeB 1499097..1499351 (+) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HPE52_RS06960 (HPE52_06965) yeeZ 1499434..1500258 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HPE52_RS06965 (HPE52_06970) yeeY 1500304..1501233 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  HPE52_RS06970 (HPE52_06975) yoeI 1501448..1501510 (+) 63 WP_010723108.1 membrane protein YoeI -
  HPE52_RS06975 (HPE52_06980) plaP 1501500..1502858 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  HPE52_RS06980 (HPE52_06985) sbcB 1502932..1504359 (-) 1428 WP_001538915.1 exodeoxyribonuclease I Machinery gene
  HPE52_RS06985 (HPE52_06990) dacD 1504568..1505734 (+) 1167 WP_115766480.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HPE52_RS06990 (HPE52_06995) sbmC 1505853..1506326 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  HPE52_RS06995 (HPE52_07000) yeeA 1506524..1507582 (+) 1059 WP_001200890.1 FUSC family protein -
  HPE52_RS07000 (HPE52_07005) tmaR 1507753..1508082 (+) 330 WP_000450409.1 DUF496 family protein -
  HPE52_RS07005 (HPE52_07010) - 1508182..1508625 (-) 444 WP_001189443.1 EutP/PduV family microcompartment system protein -
  HPE52_RS07010 (HPE52_07015) pduU 1508630..1508980 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54483.79 Da        Isoelectric Point: 5.4720

>NTDB_id=398865 HPE52_RS06980 WP_001538915.1 1502932..1504359(-) (sbcB) [Escherichia coli strain SCU-176]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTTWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=398865 HPE52_RS06980 WP_001538915.1 1502932..1504359(-) (sbcB) [Escherichia coli strain SCU-176]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCACCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581