Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPE52_RS04065 Genome accession   NZ_CP054345
Coordinates   860113..860628 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain SCU-176     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 855113..865628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE52_RS04020 (HPE52_04020) csrA 855968..856153 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HPE52_RS04050 (HPE52_04050) yqaB 857343..857909 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HPE52_RS04055 (HPE52_04055) yqaA 857906..858334 (+) 429 WP_001287462.1 YqaA family protein -
  HPE52_RS04060 (HPE52_04060) gshA 858407..859963 (+) 1557 WP_001539417.1 glutamate--cysteine ligase -
  HPE52_RS04065 (HPE52_04065) luxS 860113..860628 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  HPE52_RS04070 (HPE52_04070) tnpA 860765..861223 (-) 459 WP_000526115.1 IS200/IS605-like element IS200C family transposase -
  HPE52_RS04075 (HPE52_04075) emrB 861403..862941 (-) 1539 WP_001539415.1 multidrug efflux MFS transporter permease subunit EmrB -
  HPE52_RS04080 (HPE52_04080) emrA 862958..864130 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HPE52_RS04085 (HPE52_04085) emrR 864257..864787 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HPE52_RS04090 (HPE52_04095) ygaH 864878..865213 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=398855 HPE52_RS04065 WP_001130208.1 860113..860628(+) (luxS) [Escherichia coli strain SCU-176]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=398855 HPE52_RS04065 WP_001130208.1 860113..860628(+) (luxS) [Escherichia coli strain SCU-176]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737