Detailed information NTG0398852

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPE52_RS03770
• Genome accession: NZ_CP054345
• Coordinates: 803725..804717 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081519.1
• Uniprot ID: -
• Organism: Escherichia coli strain SCU-176
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 798725..809717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPE52_RS03740 (HPE52_03740)	ispD	798786..799496 (+)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPE52_RS03745 (HPE52_03745)	ispF	799496..799975 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPE52_RS03750 (HPE52_03750)	truD	799972..801021 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
HPE52_RS03755 (HPE52_03755)	surE	801002..801763 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HPE52_RS03760 (HPE52_03760)	pcm	801757..802383 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HPE52_RS03765 (HPE52_03765)	nlpD	802568..803662 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HPE52_RS03770 (HPE52_03770)	rpoS	803725..804717 (+)	993	WP_000081519.1	RNA polymerase sigma factor RpoS	Regulator
HPE52_RS03775 (HPE52_03775)	-	804895..805446 (-)	552	WP_001179442.1	flavodoxin family protein	-
HPE52_RS03780 (HPE52_03780)	-	805671..806714 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
HPE52_RS03785 (HPE52_03785)	ygbN	806857..808221 (-)	1365	WP_000104433.1	GntP family transporter	-
HPE52_RS03790 (HPE52_03790)	ygbM	808310..809086 (-)	777	WP_001539449.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38004.90 Da
• Isoelectric Point: 4.5597

>NTDB_id=398852 HPE52_RS03770 WP_000081519.1 803725..804717(+) (rpoS) [Escherichia coli strain SCU-176]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLMVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=398852 HPE52_RS03770 WP_000081519.1 803725..804717(+) (rpoS) [Escherichia coli strain SCU-176]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGATGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712