Detailed information NTG0398830

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: HTZ78_RS13480
• Genome accession: NZ_CP054306
• Coordinates: 2900459..2901613 (-)
• Length: 384 a.a.
• NCBI ID: WP_212722281.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 7338
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2895459..2906613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HTZ78_RS13450 (HTZ78_13445)	queG	2895882..2896787 (-)	906	WP_255611398.1	tRNA epoxyqueuosine(34) reductase QueG	-
HTZ78_RS13455 (HTZ78_13450)	ribH	2896883..2897380 (-)	498	WP_212716724.1	6,7-dimethyl-8-ribityllumazine synthase	-
HTZ78_RS13460 (HTZ78_13455)	psbZ	2897504..2897692 (-)	189	WP_014407093.1	photosystem II reaction center protein PsbZ	-
HTZ78_RS13470 (HTZ78_13465)	-	2898028..2898939 (-)	912	WP_212716726.1	M48 family metallopeptidase	-
HTZ78_RS13475 (HTZ78_13470)	-	2899310..2900308 (+)	999	WP_212716728.1	30S ribosomal protein S1	-
HTZ78_RS13480 (HTZ78_13475)	recF	2900459..2901613 (-)	1155	WP_212722281.1	DNA replication/repair protein RecF	Machinery gene
HTZ78_RS13485 (HTZ78_13480)	-	2901655..2903316 (-)	1662	WP_223343203.1	ABC transporter ATP-binding protein	-
HTZ78_RS13490 (HTZ78_13485)	pyk	2903529..2905304 (-)	1776	WP_212716732.1	pyruvate kinase	-
HTZ78_RS13495 (HTZ78_13490)	-	2905485..2905913 (+)	429	WP_212716734.1	DUF1824 family protein	-
HTZ78_RS13500 (HTZ78_13495)	-	2906060..2906575 (-)	516	WP_212716736.1	TIGR02652 family protein	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 43736.94 Da
• Isoelectric Point: 6.7005

>NTDB_id=398830 HTZ78_RS13480 WP_212722281.1 2900459..2901613(-) (recF) [Synechocystis sp. PCC 7338]
MYLKKLYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLLEAVELLATLKSHRTSRDQELVLDGAASGQIKALLERQYSV
AELEIGLRRSGRRNLRINQNQCRRQLDFLGCLNAVEFSCLDLDLVRGAPDCRRQWLDTLLTQLEPLYAHILAQYQHIVKQ
RNALLKSLRQQWETGLALGEELTASLKLWDQQLVEMGTRVARRRARGLARLAPLAQEWHGRISGGNETLTVTYQPNVIWE
GDEPEIVHQAFLARLAQRRSAELHLGATVVGPHRDEVGFAIDETPARTYGSQGQQRTLVLALKLAELSLIETVIGEPPLL
LLDDVLAELDLDRQGQLLMAIEDRFQTLITTTHLNRFDDRWRRSSQIIKVNGGQLEERWPSEID

Nucleotide

• Length: 1155 bp

>NTDB_id=398830 HTZ78_RS13480 WP_212722281.1 2900459..2901613(-) (recF) [Synechocystis sp. PCC 7338]
ATGTACCTGAAAAAACTTTATTTACGGGCCTTTCGCAATTACCTGGAAGAGGAGGTGGAATTTTCTGCTCAAAAAACCAT
TTTGGTGGGCAATAATGCCCAGGGTAAATCTAACTTATTGGAAGCAGTAGAACTATTAGCAACCCTCAAAAGTCATCGTA
CTAGCCGGGACCAGGAATTGGTGTTGGATGGGGCGGCCAGTGGCCAAATTAAAGCTTTACTGGAAAGACAGTACAGTGTG
GCAGAATTAGAAATTGGCCTACGGCGATCAGGCAGGCGTAATCTACGCATTAACCAAAACCAATGCCGCCGCCAGTTAGA
TTTTTTGGGTTGCTTAAATGCAGTGGAATTTTCCTGTTTAGATTTAGATTTGGTCAGAGGCGCACCGGACTGTCGTCGCC
AGTGGCTAGATACTTTATTAACTCAACTAGAACCCCTCTATGCCCACATTTTAGCTCAATACCAACATATTGTTAAACAA
CGCAATGCTTTACTAAAAAGCCTCCGACAGCAGTGGGAAACCGGTCTAGCTTTGGGGGAAGAATTAACTGCTTCTTTGAA
ACTCTGGGATCAGCAATTGGTGGAAATGGGGACTAGGGTAGCCCGCCGTCGGGCGAGGGGTTTGGCCCGGCTAGCTCCCT
TGGCCCAGGAGTGGCATGGGCGCATTAGCGGCGGCAATGAGACCCTCACTGTGACCTATCAACCCAATGTGATCTGGGAA
GGGGATGAACCGGAAATAGTACACCAGGCTTTTTTGGCAAGATTGGCCCAACGGCGATCGGCAGAATTGCATCTGGGGGC
AACGGTGGTGGGGCCCCATCGAGACGAAGTGGGGTTTGCCATTGATGAAACCCCGGCCAGAACCTATGGCTCCCAGGGAC
AACAACGAACCTTGGTGCTGGCATTGAAATTGGCTGAATTAAGTTTAATTGAAACGGTAATTGGGGAGCCGCCCCTGTTG
TTATTGGATGATGTCTTGGCGGAGTTGGACCTTGATCGCCAGGGGCAATTGTTGATGGCCATTGAAGATCGCTTTCAAAC
CCTTATTACCACCACCCACTTAAATCGTTTTGATGACCGCTGGCGGCGATCGTCCCAGATCATTAAAGTTAATGGAGGTC
AACTGGAGGAACGGTGGCCGTCGGAAATTGATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	37.5	97.917	0.367