Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   APZ19_RS20640 Genome accession   NZ_CP045860
Coordinates   752075..753256 (+) Length   393 a.a.
NCBI ID   WP_054824686.1    Uniprot ID   -
Organism   Vibrio owensii strain SH14     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 747075..758256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APZ19_RS20630 (APZ19_20630) - 749413..750399 (+) 987 WP_054824687.1 peptidoglycan DD-metalloendopeptidase family protein -
  APZ19_RS20635 (APZ19_20635) ylqF 750721..751665 (+) 945 WP_009704187.1 ribosome biogenesis GTPase YlqF -
  APZ19_RS20640 (APZ19_20640) cqsA 752075..753256 (+) 1182 WP_054824686.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  APZ19_RS20645 (APZ19_20645) - 753412..755457 (-) 2046 WP_054824685.1 hybrid sensor histidine kinase/response regulator -
  APZ19_RS20650 (APZ19_20650) - 755761..756378 (+) 618 WP_033005631.1 HAD family hydrolase -
  APZ19_RS20655 (APZ19_20655) - 756446..756994 (-) 549 WP_005437703.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44065.13 Da        Isoelectric Point: 5.8737

>NTDB_id=398777 APZ19_RS20640 WP_054824686.1 752075..753256(+) (cqsA) [Vibrio owensii strain SH14]
MSDKLKTKRLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQPEAVVMQSNDYLSLSHNQQIQKAHRDAISEHDDNVVMS
AIFLQDDDSKPAFETQLADYVGMGSCLLSQSGFAANIGLLQTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMS
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAK
TFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEVIRLEKTLEVIKDADDKRTMLFNRAKELRTGLKQIGFNIRSESQ
IIALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDIDHVLTACQEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=398777 APZ19_RS20640 WP_054824686.1 752075..753256(+) (cqsA) [Vibrio owensii strain SH14]
ATGAGTGATAAACTGAAAACGAAACGACTTCCTTCCTTTGTTGAGGAACGCCTGGACTTTTATATTCAAGATCTGATTGA
ACAGAACGAGAACCAAAAGCACTTGGTATTAGGGAAACGACCGCAACCCGAAGCTGTGGTCATGCAGAGTAACGATTACT
TATCGCTATCTCATAACCAACAGATTCAAAAAGCTCACCGAGATGCGATATCTGAGCATGATGATAACGTCGTTATGTCT
GCGATTTTCTTGCAAGATGATGATTCGAAGCCTGCATTTGAAACGCAACTTGCGGATTACGTCGGCATGGGGAGTTGCTT
GCTTTCCCAGTCGGGATTTGCTGCGAATATAGGATTGTTGCAGACCATTTGTCCGCCTGAAACGCCGGTTTATATCGACT
TCTTTGCGCATATGTCATTGTGGGAAGGTATTCGGGCCGCGGGAGCACAAGCGCATCCGTTCATGCACAACAACATGAGC
CACTTGCGTAAGCAGATCCAGCGTCATGGCTCAGGCGTTATCGTGGTAGATTCGGTCTACAGCACGATAGGCACGATCGC
CCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGATTGTGCTTTAGTGGTGGATGAATCCCACTCGTTAGGAACAC
ACGGGCCTAACGGCTCTGGCTTGGTAAAAGCGTTGGAACTCACTGATCAAGTAGATTTCATTACTGTCAGTCTGGCAAAA
ACCTTTGCTTATCGAGCAGGAGCGATTCTCGGCCCAGAAAAACTGGCGCGAACGTTACCATTTGTTGCGTTCCCGGCCAT
TTTTAGTTCAACGGTTCTGCCACAAGAAGTCATTCGGCTAGAGAAAACGCTCGAAGTGATTAAAGACGCCGATGATAAAC
GAACCATGCTGTTCAATCGCGCTAAAGAGCTCAGAACGGGCCTTAAGCAGATTGGTTTTAATATCCGCAGCGAATCACAA
ATTATCGCGTTAGAGTGCGGTAGCGAGCGTAATACCGAGCGAGTACGTGACTTCTTGGAAGAACGTAATGTCTTTGGCGC
TGTATTTTGTCGCCCGGCAACGGGAAAGAATAAAAACATTATTCGATTCTCAATCAACGCCGACATGACGTCTCGCGACA
TCGACCATGTGCTGACCGCTTGTCAGGAAGCGTATAACCACCCAGAACTAGAGTTTGTTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.959

98.728

0.562

Multiple sequence alignment