Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   APZ19_RS17345 Genome accession   NZ_CP045860
Coordinates   2281..3378 (+) Length   365 a.a.
NCBI ID   WP_009704766.1    Uniprot ID   A0AAP9KBR2
Organism   Vibrio owensii strain SH14     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..8378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APZ19_RS17325 (APZ19_17325) - 105..419 (-) 315 WP_005442423.1 DUF496 family protein -
  APZ19_RS17330 (APZ19_17330) - 658..861 (+) 204 WP_009704769.1 hypothetical protein -
  APZ19_RS17335 (APZ19_17335) - 955..1608 (+) 654 WP_054823752.1 YceH family protein -
  APZ19_RS17340 (APZ19_17340) - 1605..1928 (+) 324 WP_009704767.1 GIY-YIG nuclease family protein -
  APZ19_RS17345 (APZ19_17345) luxP 2281..3378 (+) 1098 WP_009704766.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  APZ19_RS17350 (APZ19_17350) luxQ 3378..5957 (+) 2580 WP_038893588.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  APZ19_RS17355 (APZ19_17355) - 6015..6677 (-) 663 WP_054823753.1 PilZ domain-containing protein -
  APZ19_RS17360 (APZ19_17360) - 6771..7697 (-) 927 WP_054823754.1 DMT family transporter -
  APZ19_RS17365 (APZ19_17365) - 7847..8302 (+) 456 WP_005442405.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41503.96 Da        Isoelectric Point: 6.3162

>NTDB_id=398775 APZ19_RS17345 WP_009704766.1 2281..3378(+) (luxP) [Vibrio owensii strain SH14]
MNKALLFSLISMVSFSPVTHATQVLNGYWAYQEFLDEFPEQRKLTNALAEAVRERPVPLSKAKKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYEAAKASLAKHPDVDFIYACSTDVALGAVDALAELGRDDIMVNGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=398775 APZ19_RS17345 WP_009704766.1 2281..3378(+) (luxP) [Vibrio owensii strain SH14]
ATGAATAAAGCGTTACTATTTTCCTTAATTTCTATGGTGAGTTTTTCTCCAGTTACCCACGCCACTCAAGTGTTGAATGG
GTACTGGGCATATCAAGAATTCTTAGATGAATTTCCTGAGCAGAGAAAACTGACCAATGCGTTGGCGGAAGCCGTTCGAG
AGCGTCCTGTTCCGCTTTCTAAAGCCAAAAAGCGTCCACTCAAAATATCGGTTGTTTATCCAGGGCAACAAGTGTCCGAT
TACTGGGTAAGAAACATCGCTGCATTTGAAAAACGATTAGACAAGTTGAATATCAACTATCAAATCAACCAAGTATTTAC
ACGACCAAATGCCGATATTAAGCAACAGAGCTTGTCATTAATGGAGGCGCTTAAGAGCAAATCCGATTATTTGATTTTCA
CGCTTGATACGACGAGACATCGTAAATTTGTTGAGCACGTATTAGATTCCACCAACACAAAATTAATCTTACAAAATATC
ACCACGCCAGTGCGTGAATGGGATAAGCATCAGCCATTTTTATATGTTGGGTTTGACCACGCAGAAGGCAGTCGTGAACT
CGCAACAGAATTCGGAAAGTACTTCCCAAAACACACATATTACAGTGTGCTTTACTTTTCTGAAGGGTACATTAGCGACG
TAAGAGGTGACACTTTCATTCACCAAGTTAACCGTGACAATAACTTTGAGCTACAATCAGCGTACTACACGAAAGCAACT
AAGCAATCCGGCTATGAGGCCGCGAAGGCGAGTTTAGCGAAACACCCAGACGTTGATTTTATTTATGCGTGTTCGACCGA
TGTGGCTTTAGGCGCTGTTGATGCATTGGCTGAGTTGGGTCGTGACGACATTATGGTTAATGGATGGGGTGGAGGCTCTG
CTGAGCTAGACGCTATTCAAAAAGGCGATTTAGACATTACCGTCATGCGTATGAATGACGATACTGGCATCGCCATGGCA
GAAGCCATTAAGTGGGACTTGGAAGGAAAGCCAGTGCCAACCGTATACTCCGGTGACTTTGAAATTGTCACAAAGGCGGA
TTCACCGGAACGAATCGAAGCGCTTAAAAAGCGTGCATTTAGATATTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

65.11

99.726

0.649

Multiple sequence alignment