Detailed information NTG0398746

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: APZ19_RS02805
• Genome accession: NZ_CP045859
• Coordinates: 565334..566317 (+)
• Length: 327 a.a.
• NCBI ID: WP_054824010.1
• Uniprot ID: A0AAP9G9L8
• Organism: Vibrio owensii strain SH14
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 560334..571317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
APZ19_RS02770 (APZ19_02770)	ftsB	560343..560624 (+)	282	WP_005436434.1	cell division protein FtsB	-
APZ19_RS02775 (APZ19_02775)	ispD	560626..561333 (+)	708	WP_054824031.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
APZ19_RS02780 (APZ19_02780)	ispF	561348..561824 (+)	477	WP_009707591.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
APZ19_RS02785 (APZ19_02785)	truD	561870..562913 (+)	1044	WP_054824011.1	tRNA pseudouridine(13) synthase TruD	-
APZ19_RS02790 (APZ19_02790)	surE	562913..563689 (+)	777	WP_005436425.1	5'/3'-nucleotidase SurE	-
APZ19_RS02795 (APZ19_02795)	-	563689..564315 (+)	627	WP_020196177.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
APZ19_RS02800 (APZ19_02800)	-	564330..565253 (+)	924	WP_005436421.1	peptidoglycan DD-metalloendopeptidase family protein	-
APZ19_RS02805 (APZ19_02805)	rpoS	565334..566317 (+)	984	WP_054824010.1	RNA polymerase sigma factor RpoS	Regulator
APZ19_RS02810 (APZ19_02810)	mutS	566406..568967 (-)	2562	WP_054824009.1	DNA mismatch repair protein MutS	-
APZ19_RS02815 (APZ19_02815)	pncC	569053..569535 (+)	483	WP_009707585.1	nicotinamide-nucleotide amidase	-
APZ19_RS02820 (APZ19_02820)	recA	569736..570779 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37181.02 Da
• Isoelectric Point: 4.7200

>NTDB_id=398746 APZ19_RS02805 WP_054824010.1 565334..566317(+) (rpoS) [Vibrio owensii strain SH14]
MSISNTVTKVEEFDYDNAQSEGIANEPAKTSTGTKSAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=398746 APZ19_RS02805 WP_054824010.1 565334..566317(+) (rpoS) [Vibrio owensii strain SH14]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGACTACGATAATGCACAATCGGAAGGCATTGCAAACGAACC
TGCAAAAACATCTACTGGAACCAAATCAGCGGCGCGCGAAGAATTTGACGCGAGCAGTAAGAGCTTAGACGCTACACAGC
TCTACTTGGGCGAAATTGGTTTCTCACCACTACTTACTGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGTGGC
GATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCGTGG
CCTCGCACTTCTTGATCTCATCGAGGAAGGCAACCTAGGTTTGATCCGTGCGGTCGAAAAGTTCGATCCAGAACGCGGTT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATCGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTCAACGAGCGTATCA
GTTCAGTTGACACACCAATCGGTGGTGACGGCGAGAAAGCGCTACTGGATATCATTCCTGATGCAAACAACTCGGATCCT
GAGGTCTCTACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTCGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATCGGACTAACGCGTG
AACGTGTTCGTCAGATCCAAGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATTAAGCAAGGTTTAAACATGGAAAAC
CTGTTTAACGTTGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.859