Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HS093_RS19560 Genome accession   NZ_CP054282
Coordinates   4113491..4114006 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain IDR1900005638-01-02     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4108491..4119006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS093_RS19515 (HS093_19495) csrA 4108943..4109128 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HS093_RS19545 (HS093_19525) yqaB 4110721..4111287 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HS093_RS19550 (HS093_19530) yqaA 4111284..4111712 (+) 429 WP_001287457.1 YqaA family protein -
  HS093_RS19555 (HS093_19535) gshA 4111785..4113341 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HS093_RS19560 (HS093_19540) luxS 4113491..4114006 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  HS093_RS19565 (HS093_19545) emrB 4114070..4115608 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HS093_RS19570 (HS093_19550) emrA 4115625..4116797 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HS093_RS19575 (HS093_19555) emrR 4116924..4117454 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HS093_RS19580 (HS093_19560) ygaH 4117545..4117880 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  HS093_RS19585 (HS093_19565) ygaZ 4117870..4118607 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=398704 HS093_RS19560 WP_001130207.1 4113491..4114006(+) (luxS) [Escherichia coli strain IDR1900005638-01-02]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=398704 HS093_RS19560 WP_001130207.1 4113491..4114006(+) (luxS) [Escherichia coli strain IDR1900005638-01-02]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731