Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GH723_RS15970 Genome accession   NZ_CP045851
Coordinates   3265170..3266543 (-) Length   457 a.a.
NCBI ID   WP_153760581.1    Uniprot ID   A0A5Q2RQQ8
Organism   Actinomarinicola tropica strain SCSIO 58843     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3260170..3271543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH723_RS15945 (GH723_15945) rlmB 3261369..3262358 (-) 990 WP_153760577.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GH723_RS15950 (GH723_15950) ispF 3262358..3262849 (-) 492 WP_229022883.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GH723_RS15955 (GH723_15955) - 3262947..3263606 (+) 660 WP_153760579.1 Crp/Fnr family transcriptional regulator -
  GH723_RS15960 (GH723_15960) - 3263596..3264096 (+) 501 WP_229022884.1 MarR family winged helix-turn-helix transcriptional regulator -
  GH723_RS15965 (GH723_15965) disA 3264087..3265160 (-) 1074 WP_153760580.1 DNA integrity scanning diadenylate cyclase DisA -
  GH723_RS15970 (GH723_15970) radA 3265170..3266543 (-) 1374 WP_153760581.1 DNA repair protein RadA Machinery gene
  GH723_RS15975 (GH723_15975) - 3266586..3266942 (-) 357 WP_153760582.1 hypothetical protein -
  GH723_RS15980 (GH723_15980) - 3267015..3267470 (-) 456 WP_153760583.1 DUF2087 domain-containing protein -
  GH723_RS15985 (GH723_15985) - 3267495..3267887 (-) 393 WP_153760584.1 MmcQ/YjbR family DNA-binding protein -
  GH723_RS15990 (GH723_15990) - 3267910..3268233 (-) 324 WP_153760585.1 hypothetical protein -
  GH723_RS15995 (GH723_15995) - 3268327..3269889 (-) 1563 WP_153760586.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 47699.69 Da        Isoelectric Point: 6.3704

>NTDB_id=398662 GH723_RS15970 WP_153760581.1 3265170..3266543(-) (radA) [Actinomarinicola tropica strain SCSIO 58843]
MARSRTVFRCTECGGAAPQWAGRCPACGEWNTLVEEVEAPSAPAARVAPVSTPAPIGEVDPTEWQPRPTGIDELDRVLGG
GLVPGSVTLLGGEPGIGKSTLLLQALASLAERHVQVLYVSGEESAQQVRLRAERLGALQPSLWFVAETDLAHVIAHLDQV
APVVCVVDSIQTMTAPDLTSSAGSVAQVRDCAARLTAEAKARGIATILVGHVTKDGGLAGPRVLEHVVDTVVSFEGERHH
ALRLLRAVKHRFGSTDELGLFEMTEGGLVGLPDPSKLFLADRRAGVSGSIVVPTIEGHRPLLVELQALVTDGGAGSPRRS
AQGLDHGRMSFLLAVLQQRAGISVSEHDVYALAVGGVRLVEPAADLALAMAVASARLDMPVPDDLVAIGEVGLGGELRQV
GQTGRRLAEAARLGFTTAIVPRSTGDAPPGVRLVRAATLADAVHMGLTAPGPIRRVR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=398662 GH723_RS15970 WP_153760581.1 3265170..3266543(-) (radA) [Actinomarinicola tropica strain SCSIO 58843]
ATGGCCCGATCCCGCACCGTGTTCCGCTGCACCGAGTGCGGCGGCGCCGCGCCCCAGTGGGCCGGTCGCTGCCCCGCGTG
CGGGGAGTGGAACACCCTCGTCGAGGAGGTGGAGGCGCCGAGCGCGCCGGCGGCCCGCGTGGCCCCGGTGTCCACACCCG
CGCCCATCGGCGAGGTCGACCCCACCGAGTGGCAGCCACGACCCACCGGCATCGACGAGCTCGACCGCGTCCTCGGCGGC
GGCCTCGTCCCCGGCTCGGTCACCCTGCTCGGCGGCGAGCCCGGCATCGGCAAGTCCACCCTCCTGCTCCAGGCCCTTGC
GTCCCTGGCCGAGCGCCACGTCCAGGTCCTCTACGTCTCGGGGGAGGAGTCCGCCCAGCAGGTGCGCCTGCGGGCCGAGC
GGCTGGGCGCCCTCCAGCCGTCGCTGTGGTTCGTCGCCGAGACGGACCTGGCCCACGTCATCGCCCACCTCGACCAGGTC
GCGCCGGTGGTCTGCGTCGTCGACTCCATCCAGACGATGACCGCCCCGGACCTCACGTCGTCGGCCGGGTCGGTCGCCCA
GGTGCGGGACTGCGCCGCCCGCCTCACCGCGGAGGCCAAGGCGCGGGGCATCGCCACCATCCTCGTGGGTCACGTCACGA
AGGACGGCGGGCTGGCCGGGCCCCGGGTGCTCGAGCACGTGGTCGACACCGTCGTCTCGTTCGAGGGCGAGCGCCACCAC
GCGCTGCGGTTGCTGCGGGCCGTCAAGCACCGGTTCGGGTCCACCGACGAGCTCGGGCTGTTCGAGATGACCGAGGGCGG
CCTCGTCGGGCTGCCCGACCCGAGCAAGCTCTTCTTGGCCGACCGGCGGGCCGGGGTGTCGGGCTCGATCGTCGTGCCCA
CCATCGAGGGCCACCGTCCGCTCCTCGTCGAGCTCCAGGCTCTCGTCACCGACGGCGGGGCGGGCTCGCCCCGCCGCTCC
GCCCAGGGCCTCGACCACGGGCGCATGTCGTTCCTGCTCGCCGTCCTCCAACAGCGTGCTGGCATCTCGGTCAGCGAGCA
CGACGTCTACGCCCTGGCCGTCGGCGGCGTCCGCCTCGTCGAGCCCGCGGCCGACCTCGCCCTCGCCATGGCGGTGGCGT
CGGCCCGCCTCGACATGCCCGTCCCCGACGACCTCGTCGCCATCGGCGAGGTCGGCCTCGGCGGCGAGCTGCGCCAGGTG
GGCCAGACGGGCCGCCGCCTGGCCGAGGCCGCCCGCCTCGGGTTCACCACCGCCATCGTCCCCCGCTCCACCGGCGACGC
CCCGCCCGGGGTGCGGCTCGTCCGGGCCGCCACGCTCGCCGACGCCGTGCACATGGGCCTCACCGCTCCGGGCCCGATCC
GGCGCGTTCGCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-216)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q2RQQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.908

100

0.49
  radA Streptococcus mitis SK321

49.539

94.967

0.47
  radA Streptococcus mitis NCTC 12261

49.309

94.967

0.468
  radA Streptococcus pneumoniae Rx1

49.415

93.435

0.462
  radA Streptococcus pneumoniae D39

49.415

93.435

0.462
  radA Streptococcus pneumoniae R6

49.415

93.435

0.462
  radA Streptococcus pneumoniae TIGR4

49.415

93.435

0.462

Multiple sequence alignment