Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HS093_RS08070 Genome accession   NZ_CP054282
Coordinates   1688797..1689402 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain IDR1900005638-01-02     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1683797..1694402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS093_RS08050 (HS093_08040) aes 1683938..1684897 (+) 960 WP_000801838.1 acetyl esterase -
  HS093_RS08055 (HS093_08045) hemH 1684894..1685856 (-) 963 WP_001250120.1 ferrochelatase -
  HS093_RS08060 (HS093_08050) adk 1685988..1686632 (-) 645 WP_001345715.1 adenylate kinase -
  HS093_RS08065 (HS093_08055) htpG 1686813..1688687 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HS093_RS08070 (HS093_08060) recR 1688797..1689402 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HS093_RS08075 (HS093_08065) ybaB 1689402..1689731 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HS093_RS08080 (HS093_08070) dnaX 1689784..1691715 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  HS093_RS08085 (HS093_08075) apt 1691844..1692395 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HS093_RS08090 (HS093_08080) ybaN 1692548..1692925 (-) 378 WP_001188905.1 DUF454 family protein -
  HS093_RS08095 (HS093_08085) priC 1692995..1693522 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  HS093_RS08100 (HS093_08090) rsmS 1693536..1693697 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HS093_RS23050 - 1693750..1693848 (-) 99 Protein_1606 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=398653 HS093_RS08070 WP_001195025.1 1688797..1689402(-) (recR) [Escherichia coli strain IDR1900005638-01-02]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=398653 HS093_RS08070 WP_001195025.1 1688797..1689402(-) (recR) [Escherichia coli strain IDR1900005638-01-02]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443