Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GHC38_RS13850 Genome accession   NZ_CP045843
Coordinates   2936841..2937449 (-) Length   202 a.a.
NCBI ID   WP_062777498.1    Uniprot ID   -
Organism   Kluyvera intermedia strain HR2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2931841..2942449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHC38_RS13835 (GHC38_13835) helD 2932062..2934116 (-) 2055 WP_153743243.1 DNA helicase IV -
  GHC38_RS13840 (GHC38_13840) - 2934239..2934685 (+) 447 WP_062777495.1 YccF domain-containing protein -
  GHC38_RS13845 (GHC38_13845) yccS 2934705..2936831 (+) 2127 WP_062777496.1 YccS family putative transporter -
  GHC38_RS13850 (GHC38_13850) sxy/tfoX 2936841..2937449 (-) 609 WP_062777498.1 TfoX/Sxy family DNA transformation protein Regulator
  GHC38_RS13855 (GHC38_13855) sulA 2937668..2938177 (+) 510 WP_153744059.1 SOS-induced cell division inhibitor SulA -
  GHC38_RS13860 (GHC38_13860) ompA 2938532..2939587 (+) 1056 WP_062777502.1 porin OmpA -
  GHC38_RS13865 (GHC38_13865) matP 2939675..2940130 (-) 456 WP_153743244.1 macrodomain Ter protein MatP -
  GHC38_RS13870 (GHC38_13870) - 2940315..2942075 (+) 1761 WP_153743245.1 Lon protease family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23331.25 Da        Isoelectric Point: 10.4580

>NTDB_id=398613 GHC38_RS13850 WP_062777498.1 2936841..2937449(-) (sxy/tfoX) [Kluyvera intermedia strain HR2]
MKVISYKRIYQSQEYFAVLGKVRSRALFGGYSLAVDDTVFAMVAEGELYLRMCEKTAIYQTQHSPPLLMLRKRGSSLQLK
YFKVDDALWANKPVLLQLGLFSLEDARREKSHQKHPQRLKDLPNLSFHMELLLHEAGIKDVRALQQMGAKTVWLLLRQKR
KQISSNVIYSLEGAIQGVHAAALPALKRQELEEWVRNRTHKN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=398613 GHC38_RS13850 WP_062777498.1 2936841..2937449(-) (sxy/tfoX) [Kluyvera intermedia strain HR2]
ATGAAGGTAATATCATATAAACGGATTTATCAATCCCAGGAATATTTTGCGGTGTTAGGAAAAGTCAGGTCACGAGCGCT
GTTTGGTGGTTACAGCCTTGCCGTTGACGACACGGTTTTCGCAATGGTTGCGGAGGGGGAGCTGTATTTGAGGATGTGCG
AAAAAACCGCCATTTATCAGACTCAGCACTCGCCGCCATTATTGATGTTACGTAAACGAGGAAGCTCGCTTCAGCTTAAG
TATTTCAAAGTAGATGATGCTCTCTGGGCCAACAAACCTGTTTTATTGCAACTGGGGCTGTTTTCACTAGAGGATGCGCG
ACGTGAAAAGTCCCATCAAAAGCATCCGCAGCGATTAAAAGATTTACCCAATCTCTCTTTTCATATGGAATTGCTGTTGC
ATGAAGCGGGTATTAAGGATGTCCGGGCGTTGCAACAAATGGGGGCGAAAACGGTGTGGTTGCTTCTTCGTCAAAAACGT
AAACAGATAAGTTCCAATGTCATTTACTCATTGGAGGGAGCCATTCAGGGTGTGCATGCTGCTGCACTCCCGGCGCTAAA
GCGTCAGGAGCTGGAAGAGTGGGTGCGCAATCGCACCCACAAGAACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

54.726

99.505

0.545

Multiple sequence alignment