Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GHC23_RS14890 Genome accession   NZ_CP045840
Coordinates   3093991..3094605 (-) Length   204 a.a.
NCBI ID   WP_079934916.1    Uniprot ID   -
Organism   Citrobacter sp. S40-1-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3088991..3099605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHC23_RS14875 helD 3089215..3091269 (-) 2055 WP_153753382.1 DNA helicase IV -
  GHC23_RS14880 - 3091395..3091841 (+) 447 WP_003831998.1 YccF domain-containing protein -
  GHC23_RS14885 yccS 3091860..3094013 (+) 2154 WP_048236463.1 YccS family putative transporter -
  GHC23_RS14890 sxy/tfoX 3093991..3094605 (-) 615 WP_079934916.1 TfoX/Sxy family DNA transformation protein Regulator
  GHC23_RS14895 sulA 3094823..3095332 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  GHC23_RS14900 ompA 3095690..3096748 (+) 1059 WP_153753383.1 porin OmpA -
  GHC23_RS14905 matP 3096837..3097289 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  GHC23_RS14910 - 3097475..3099235 (+) 1761 WP_153753385.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23196.60 Da        Isoelectric Point: 8.6049

>NTDB_id=398592 GHC23_RS14890 WP_079934916.1 3093991..3094605(-) (sxy/tfoX) [Citrobacter sp. S40-1-2]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=398592 GHC23_RS14890 WP_079934916.1 3093991..3094605(-) (sxy/tfoX) [Citrobacter sp. S40-1-2]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTTGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGCTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.137

100

0.681

Multiple sequence alignment