Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GDS87_RS24165 Genome accession   NZ_CP045835
Coordinates   4898745..4900121 (-) Length   458 a.a.
NCBI ID   WP_369594122.1    Uniprot ID   -
Organism   Lysinibacillus pakistanensis strain LZH-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4893745..4905121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDS87_RS24145 (GDS87_23635) ispF 4894238..4894714 (-) 477 WP_054771413.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GDS87_RS24150 (GDS87_23640) - 4894899..4896557 (+) 1659 WP_369594120.1 SWIM zinc finger domain-containing protein -
  GDS87_RS24155 (GDS87_23645) ispD 4896664..4897356 (-) 693 WP_054771451.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GDS87_RS24160 (GDS87_23650) - 4897369..4898454 (-) 1086 WP_369594121.1 PIN/TRAM domain-containing protein -
  GDS87_RS24165 (GDS87_23655) radA 4898745..4900121 (-) 1377 WP_369594122.1 DNA repair protein RadA Machinery gene
  GDS87_RS24170 (GDS87_23660) - 4900229..4902673 (-) 2445 WP_369594123.1 ATP-dependent Clp protease ATP-binding subunit -
  GDS87_RS24175 (GDS87_23665) - 4902663..4903772 (-) 1110 WP_369594124.1 protein arginine kinase -
  GDS87_RS24180 (GDS87_23670) - 4903769..4904317 (-) 549 WP_283870092.1 UvrB/UvrC motif-containing protein -
  GDS87_RS24185 (GDS87_23675) - 4904331..4904801 (-) 471 WP_283870093.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50185.04 Da        Isoelectric Point: 7.3824

>NTDB_id=398551 GDS87_RS24165 WP_369594122.1 4898745..4900121(-) (radA) [Lysinibacillus pakistanensis strain LZH-9]
MAKKKTKFVCTGCGYESAKWMGRCPGCGEWNKMVEEVEVVAKGPRGAFQHSATVTQKALPIMQIEAAEESRITTEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVVSQELYIYSETNLEFLNQ
TIEDVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFVGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRIFVPASNIGGWDFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=398551 GDS87_RS24165 WP_369594122.1 4898745..4900121(-) (radA) [Lysinibacillus pakistanensis strain LZH-9]
TTGGCAAAGAAAAAAACGAAATTTGTATGCACAGGCTGTGGCTATGAATCTGCAAAATGGATGGGAAGATGTCCAGGCTG
TGGGGAATGGAATAAGATGGTCGAAGAAGTAGAGGTCGTAGCAAAGGGACCTCGTGGAGCCTTTCAGCATTCTGCGACAG
TTACGCAAAAAGCTCTTCCTATTATGCAGATCGAGGCTGCTGAGGAGTCTCGAATTACAACAGAAATGGGTGAGCTTAAC
CGAGTGCTAGGTGGGGGAATCGTACCGGGCTCTCTTGTACTTATAGGAGGTGACCCTGGTATTGGGAAGTCGACGCTATT
ATTACAGGTGTCTGCTTTACTTTCAAATAAGGGACATCGTGTGCTCTACATTTCTGGTGAGGAATCAATCCGCCAAACAA
AGCTACGTGCAGAGCGTTTAGGGGTGGTTTCACAGGAGCTTTATATCTATTCAGAAACAAATTTAGAGTTTCTAAATCAA
ACTATTGAGGATGTGCAACCGAAATTTGTTATTGTCGATTCCATTCAAACTGTGTTTCATCCTGAAGTAACAAGTGCTCC
TGGCAGTGTATCGCAGGTGCGAGAGTGTACGGCAGAGTTGATGAGAATTGCTAAAACGAAGGGAATCGCTATATTTTTAG
TTGGACATGTAACAAAAGAGGGGCAAATTGCAGGTCCACGTATTTTGGAGCATATGGTAGATACTGTGCTGTATTTTGAG
GGGGAGCGACACCATAATCACCGTATTCTGCGTAGTCAAAAGAACCGTTTTGGCTCAACAAATGAGATTGCTATATTTGA
AATGCTTCAGGGGGGCTTAAAGGAAGTATTAAATCCATCAGAACTCTTTTTACAGGAGCGTTCACAGGGGGCAGCAGGGT
CAACCATTGTGGCTTCTATGGAGGGTACACGACCAATTCTTGTTGAAATTCAGTCACTCGTAACACCTACGAGCTTTAAC
TATCCAAAGCGTATGGCAACAGGTGTTGATCAAAACCGTGTGCAGTTGTTAATGGCTGTTCTAGAAAAGAGAATGGGCCT
CATGCTACAGGCACAGGATGCATATATTAAAGTTGCTGGCGGTGTAAAGCTAGATGAACCAGCCATTGATTTAGCAGTGT
TGACAAGCATTGTCTCCAGCTTTAAGGATCAAGCAGTTAGAGCTACAGATTGTTTTGTTGGAGAAGTAGGGTTGACGGGA
GAGGTGCGTCGTGTTTCCCGTATTGAACAACGTGTAATAGAGGCGGCAAAGCTAGGGTTTAAACGGATATTCGTTCCGGC
TTCAAATATTGGCGGCTGGGATTTTCCACAAGGTATTGAGATTGTTGGAGTAGAAACCATAAAAGATGCACTGAATGCTT
GCTTTAGAGAGCTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.044

99.127

0.694
  radA Streptococcus pneumoniae Rx1

62.939

99.563

0.627
  radA Streptococcus pneumoniae D39

62.939

99.563

0.627
  radA Streptococcus pneumoniae R6

62.939

99.563

0.627
  radA Streptococcus pneumoniae TIGR4

62.939

99.563

0.627
  radA Streptococcus mitis NCTC 12261

62.939

99.563

0.627
  radA Streptococcus mitis SK321

62.939

99.563

0.627

Multiple sequence alignment