Detailed information NTG0398484

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HR071_RS07510
• Genome accession: NZ_CP054232
• Coordinates: 1541675..1542667 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EcPF7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1536675..1547667

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HR071_RS07490 (HR071_07485)	ygbM	1537313..1538089 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
HR071_RS07495 (HR071_07490)	ygbN	1538178..1539542 (+)	1365	WP_000104433.1	GntP family transporter	-
HR071_RS07500 (HR071_07495)	-	1539685..1540728 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
HR071_RS07505 (HR071_07500)	-	1540953..1541504 (+)	552	WP_001179444.1	flavodoxin family protein	-
HR071_RS07510 (HR071_07505)	rpoS	1541675..1542667 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HR071_RS07515 (HR071_07510)	nlpD	1542730..1543824 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
HR071_RS07520 (HR071_07515)	pcm	1544009..1544635 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HR071_RS07525 (HR071_07520)	surE	1544629..1545390 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HR071_RS07530 (HR071_07525)	truD	1545371..1546420 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
HR071_RS07535 (HR071_07530)	ispF	1546417..1546896 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HR071_RS07540 (HR071_07535)	ispD	1546896..1547606 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=398484 HR071_RS07510 WP_000081550.1 1541675..1542667(-) (rpoS) [Escherichia coli strain EcPF7]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=398484 HR071_RS07510 WP_000081550.1 1541675..1542667(-) (rpoS) [Escherichia coli strain EcPF7]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715