Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GIJ09_RS00535 Genome accession   NZ_CP045832
Coordinates   108191..108790 (-) Length   199 a.a.
NCBI ID   WP_003687354.1    Uniprot ID   A0AA44U8R8
Organism   Neisseria gonorrhoeae strain AUSMDU00010541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 103191..113790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIJ09_RS00520 (GIJ09_00520) pilQ 104766..106961 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  GIJ09_RS00525 (GIJ09_00525) pilP 106980..107525 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  GIJ09_RS00530 (GIJ09_00530) - 107543..108190 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  GIJ09_RS00535 (GIJ09_00535) pilN 108191..108790 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  GIJ09_RS00540 (GIJ09_00540) pilM 108793..109908 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  GIJ09_RS00545 (GIJ09_00545) - 110060..112456 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  GIJ09_RS00550 (GIJ09_00550) yihA 112577..113206 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22183.53 Da        Isoelectric Point: 9.8898

>NTDB_id=398473 GIJ09_RS00535 WP_003687354.1 108191..108790(-) (pilN) [Neisseria gonorrhoeae strain AUSMDU00010541]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=398473 GIJ09_RS00535 WP_003687354.1 108191..108790(-) (pilN) [Neisseria gonorrhoeae strain AUSMDU00010541]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975

Multiple sequence alignment