Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HR072_RS06320 Genome accession   NZ_CP054230
Coordinates   1310110..1310625 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain EcPF14     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1305110..1315625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR072_RS06280 (HR072_06285) csrA 1306105..1306290 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HR072_RS06305 (HR072_06310) yqaB 1307340..1307906 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HR072_RS06310 (HR072_06315) yqaA 1307903..1308331 (+) 429 WP_001287462.1 YqaA family protein -
  HR072_RS06315 (HR072_06320) gshA 1308404..1309960 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HR072_RS06320 (HR072_06325) luxS 1310110..1310625 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  HR072_RS06325 (HR072_06330) - 1310674..1311786 (-) 1113 WP_000638135.1 ATP-binding protein -
  HR072_RS06330 (HR072_06335) - 1311783..1312480 (-) 698 Protein_1260 RNA ligase family protein -
  HR072_RS06335 (HR072_06340) emrB 1312738..1314276 (-) 1539 WP_001305258.1 multidrug efflux MFS transporter permease subunit EmrB -
  HR072_RS06340 (HR072_06345) emrA 1314293..1315465 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=398403 HR072_RS06320 WP_001130208.1 1310110..1310625(+) (luxS) [Escherichia coli strain EcPF14]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=398403 HR072_RS06320 WP_001130208.1 1310110..1310625(+) (luxS) [Escherichia coli strain EcPF14]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACTTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737