Detailed information NTG0398400

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HR072_RS06035
• Genome accession: NZ_CP054230
• Coordinates: 1256964..1257956 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EcPF14
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1251964..1262956

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HR072_RS06005 (HR072_06010)	ispD	1252025..1252735 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HR072_RS06010 (HR072_06015)	ispF	1252735..1253214 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HR072_RS06015 (HR072_06020)	truD	1253211..1254260 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
HR072_RS06020 (HR072_06025)	surE	1254241..1255002 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HR072_RS06025 (HR072_06030)	pcm	1254996..1255622 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HR072_RS06030 (HR072_06035)	nlpD	1255807..1256901 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
HR072_RS06035 (HR072_06040)	rpoS	1256964..1257956 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HR072_RS06040 (HR072_06045)	-	1258134..1258685 (-)	552	WP_001179443.1	flavodoxin family protein	-
HR072_RS06045 (HR072_06050)	-	1258910..1259953 (+)	1044	WP_001161574.1	MBL fold metallo-hydrolase	-
HR072_RS06050 (HR072_06055)	ygbN	1260096..1261460 (-)	1365	WP_000104433.1	GntP family transporter	-
HR072_RS06055 (HR072_06060)	ygbM	1261549..1262325 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=398400 HR072_RS06035 WP_000081550.1 1256964..1257956(+) (rpoS) [Escherichia coli strain EcPF14]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=398400 HR072_RS06035 WP_000081550.1 1256964..1257956(+) (rpoS) [Escherichia coli strain EcPF14]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715