Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GII76_RS11675 Genome accession   NZ_CP045826
Coordinates   2274498..2275118 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain 73     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2269498..2280118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII76_RS11635 (GII76_11635) ptsA 2270626..2271132 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  GII76_RS11640 (GII76_11640) ypqA 2271270..2271689 (+) 420 WP_029726787.1 Hsp20/alpha crystallin family protein -
  GII76_RS11645 (GII76_11645) sppG 2271710..2272087 (-) 378 WP_015251832.1 YppG family protein -
  GII76_RS11650 (GII76_11650) yppF 2272275..2272463 (+) 189 WP_003230690.1 YppF family protein -
  GII76_RS11655 (GII76_11655) yppE 2272505..2272876 (-) 372 WP_029726786.1 YppE family protein -
  GII76_RS11660 (GII76_11660) yppD 2272922..2273167 (-) 246 WP_015251831.1 YppD family protein -
  GII76_RS11665 (GII76_11665) sspM 2273366..2273470 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  GII76_RS11670 (GII76_11670) yppC 2273495..2274457 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  GII76_RS11675 (GII76_11675) recU 2274498..2275118 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  GII76_RS11680 (GII76_11680) ponA 2275140..2277884 (+) 2745 WP_029726784.1 PBP1A family penicillin-binding protein -
  GII76_RS11685 (GII76_11685) ypoC 2277960..2278454 (-) 495 WP_029726783.1 YpoC family protein -
  GII76_RS11690 (GII76_11690) nth 2278451..2279110 (-) 660 WP_029726782.1 endonuclease III -
  GII76_RS11695 (GII76_11695) dnaD 2279129..2279827 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=398381 GII76_RS11675 WP_004399067.1 2274498..2275118(+) (recU) [Bacillus subtilis strain 73]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=398381 GII76_RS11675 WP_004399067.1 2274498..2275118(+) (recU) [Bacillus subtilis strain 73]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment