Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GII76_RS08345 Genome accession   NZ_CP045826
Coordinates   1594348..1594626 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain 73     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1589348..1599626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII76_RS08325 (GII76_08325) panEB 1590536..1591447 (+) 912 WP_038427635.1 ketopantoate reductase family protein -
  GII76_RS08330 (GII76_08330) ampS 1591481..1592713 (-) 1233 WP_003232341.1 aminopeptidase -
  GII76_RS08335 (GII76_08335) ykpC 1592822..1592956 (-) 135 WP_003238865.1 protein YkpC -
  GII76_RS08340 (GII76_08340) mreBH 1593057..1594064 (-) 1008 WP_029727190.1 cell shape-determining protein MreBH -
  GII76_RS08345 (GII76_08345) abrB 1594348..1594626 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  GII76_RS08350 (GII76_08350) kinC 1594816..1596102 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  GII76_RS08355 (GII76_08355) ykqA 1596118..1596945 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  GII76_RS08360 (GII76_08360) ktrC 1597008..1597673 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  GII76_RS08365 (GII76_08365) ade 1597829..1599562 (+) 1734 WP_032721495.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=398376 GII76_RS08345 WP_003244728.1 1594348..1594626(+) (abrB) [Bacillus subtilis strain 73]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=398376 GII76_RS08345 WP_003244728.1 1594348..1594626(+) (abrB) [Bacillus subtilis strain 73]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment